Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
NKX2-3Q8TAU0 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
NKX2-3Q8TAU0 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC20.94■□□□□ 0.94
NKX2-3Q8TAU0 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
NKX2-3Q8TAU0 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NKX2-3Q8TAU0 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
NKX2-3Q8TAU0 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
NKX2-3Q8TAU0 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NKX2-3Q8TAU0 AC018712.1-201ENST00000455767 687 ntBASIC20.94■□□□□ 0.94
NKX2-3Q8TAU0 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC20.94■□□□□ 0.94
NKX2-3Q8TAU0 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC20.94■□□□□ 0.94
NKX2-3Q8TAU0 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC20.94■□□□□ 0.94
NKX2-3Q8TAU0 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC20.94■□□□□ 0.94
NKX2-3Q8TAU0 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC20.94■□□□□ 0.94
NKX2-3Q8TAU0 AC055717.3-201ENST00000622967 595 ntBASIC20.94■□□□□ 0.94
NKX2-3Q8TAU0 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
NKX2-3Q8TAU0 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
NKX2-3Q8TAU0 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
NKX2-3Q8TAU0 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
NKX2-3Q8TAU0 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
NKX2-3Q8TAU0 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
NKX2-3Q8TAU0 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
NKX2-3Q8TAU0 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC20.94■□□□□ 0.94
NKX2-3Q8TAU0 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
NKX2-3Q8TAU0 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NKX2-3Q8TAU0 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC20.93■□□□□ 0.94
NKX2-3Q8TAU0 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC20.93■□□□□ 0.94
NKX2-3Q8TAU0 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC20.93■□□□□ 0.94
NKX2-3Q8TAU0 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
NKX2-3Q8TAU0 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
NKX2-3Q8TAU0 MED16-201ENST00000269814 1199 ntTSL 5 BASIC20.93■□□□□ 0.94
NKX2-3Q8TAU0 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NKX2-3Q8TAU0 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
NKX2-3Q8TAU0 URGCP-206ENST00000446958 365 ntTSL 2 BASIC20.93■□□□□ 0.94
NKX2-3Q8TAU0 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC20.93■□□□□ 0.94
NKX2-3Q8TAU0 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC20.93■□□□□ 0.94
NKX2-3Q8TAU0 AP001160.2-201ENST00000596071 487 ntBASIC20.93■□□□□ 0.94
NKX2-3Q8TAU0 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
NKX2-3Q8TAU0 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
NKX2-3Q8TAU0 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC20.93■□□□□ 0.94
NKX2-3Q8TAU0 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
NKX2-3Q8TAU0 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC20.93■□□□□ 0.94
NKX2-3Q8TAU0 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
NKX2-3Q8TAU0 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC20.93■□□□□ 0.94
NKX2-3Q8TAU0 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
NKX2-3Q8TAU0 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NKX2-3Q8TAU0 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
NKX2-3Q8TAU0 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NKX2-3Q8TAU0 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NKX2-3Q8TAU0 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
NKX2-3Q8TAU0 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NKX2-3Q8TAU0 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC20.92■□□□□ 0.94
NKX2-3Q8TAU0 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC20.92■□□□□ 0.94
NKX2-3Q8TAU0 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC20.92■□□□□ 0.94
NKX2-3Q8TAU0 PGAM5P1-201ENST00000518923 814 ntBASIC20.92■□□□□ 0.94
NKX2-3Q8TAU0 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC20.92■□□□□ 0.94
NKX2-3Q8TAU0 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
NKX2-3Q8TAU0 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
NKX2-3Q8TAU0 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC20.92■□□□□ 0.94
NKX2-3Q8TAU0 MNT-208ENST00000575394 606 ntTSL 4 BASIC20.92■□□□□ 0.94
NKX2-3Q8TAU0 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC20.92■□□□□ 0.94
NKX2-3Q8TAU0 AP001269.4-201ENST00000609611 512 ntBASIC20.92■□□□□ 0.94
NKX2-3Q8TAU0 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
NKX2-3Q8TAU0 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
NKX2-3Q8TAU0 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NKX2-3Q8TAU0 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
NKX2-3Q8TAU0 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NKX2-3Q8TAU0 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NKX2-3Q8TAU0 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NKX2-3Q8TAU0 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NKX2-3Q8TAU0 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NKX2-3Q8TAU0 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC20.92■□□□□ 0.94
NKX2-3Q8TAU0 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
NKX2-3Q8TAU0 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
NKX2-3Q8TAU0 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NKX2-3Q8TAU0 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NKX2-3Q8TAU0 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NKX2-3Q8TAU0 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
NKX2-3Q8TAU0 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NKX2-3Q8TAU0 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NKX2-3Q8TAU0 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC20.91■□□□□ 0.94
NKX2-3Q8TAU0 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
NKX2-3Q8TAU0 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
NKX2-3Q8TAU0 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
NKX2-3Q8TAU0 HIST2H3DP1-201ENST00000401004 416 ntBASIC20.91■□□□□ 0.94
NKX2-3Q8TAU0 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
NKX2-3Q8TAU0 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC20.91■□□□□ 0.94
NKX2-3Q8TAU0 AL355312.1-201ENST00000407115 2176 ntBASIC20.91■□□□□ 0.94
NKX2-3Q8TAU0 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NKX2-3Q8TAU0 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC20.91■□□□□ 0.94
NKX2-3Q8TAU0 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NKX2-3Q8TAU0 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
NKX2-3Q8TAU0 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
NKX2-3Q8TAU0 AC132008.2-207ENST00000454517 770 ntBASIC20.91■□□□□ 0.94
NKX2-3Q8TAU0 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC20.91■□□□□ 0.94
NKX2-3Q8TAU0 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC20.91■□□□□ 0.94
NKX2-3Q8TAU0 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC20.91■□□□□ 0.94
NKX2-3Q8TAU0 GNE-204ENST00000539208 2190 ntTSL 2 BASIC20.91■□□□□ 0.94
NKX2-3Q8TAU0 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC20.91■□□□□ 0.94
NKX2-3Q8TAU0 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms