Protein–RNA interactions for Protein: Q86U70

LDB1, LIM domain-binding protein 1, humanhuman

Predicted RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1Q86U70 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.42
LDB1Q86U70 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.42
LDB1Q86U70 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.71■□□□□ 0.42
LDB1Q86U70 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17.7■□□□□ 0.42
LDB1Q86U70 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
LDB1Q86U70 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LDB1Q86U70 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
LDB1Q86U70 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC17.7■□□□□ 0.42
LDB1Q86U70 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LDB1Q86U70 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LDB1Q86U70 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.7■□□□□ 0.42
LDB1Q86U70 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
LDB1Q86U70 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
LDB1Q86U70 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
LDB1Q86U70 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
LDB1Q86U70 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC17.7■□□□□ 0.42
LDB1Q86U70 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC17.7■□□□□ 0.42
LDB1Q86U70 CNP-204ENST00000472031 1019 ntTSL 2 BASIC17.7■□□□□ 0.42
LDB1Q86U70 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC17.7■□□□□ 0.42
LDB1Q86U70 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC17.7■□□□□ 0.42
LDB1Q86U70 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LDB1Q86U70 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC17.7■□□□□ 0.42
LDB1Q86U70 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.7■□□□□ 0.42
LDB1Q86U70 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LDB1Q86U70 AC124864.1-201ENST00000623408 392 ntBASIC17.7■□□□□ 0.42
LDB1Q86U70 VPS72-207ENST00000640458 689 ntTSL 5 BASIC17.7■□□□□ 0.42
LDB1Q86U70 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
LDB1Q86U70 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LDB1Q86U70 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LDB1Q86U70 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
LDB1Q86U70 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LDB1Q86U70 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
LDB1Q86U70 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
LDB1Q86U70 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
LDB1Q86U70 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC17.7■□□□□ 0.42
LDB1Q86U70 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LDB1Q86U70 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC17.69■□□□□ 0.42
LDB1Q86U70 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LDB1Q86U70 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LDB1Q86U70 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LDB1Q86U70 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC17.69■□□□□ 0.42
LDB1Q86U70 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.69■□□□□ 0.42
LDB1Q86U70 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.69■□□□□ 0.42
LDB1Q86U70 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LDB1Q86U70 AC108860.2-201ENST00000562760 2183 ntBASIC17.69■□□□□ 0.42
LDB1Q86U70 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LDB1Q86U70 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LDB1Q86U70 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LDB1Q86U70 AC133963.1-201ENST00000504166 1679 ntBASIC17.69■□□□□ 0.42
LDB1Q86U70 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LDB1Q86U70 BET1L-202ENST00000332865 533 ntTSL 5 BASIC17.69■□□□□ 0.42
LDB1Q86U70 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LDB1Q86U70 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LDB1Q86U70 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
LDB1Q86U70 RN7SL606P-201ENST00000472779 293 ntBASIC17.69■□□□□ 0.42
LDB1Q86U70 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC17.69■□□□□ 0.42
LDB1Q86U70 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LDB1Q86U70 AL592071.1-201ENST00000611956 408 ntBASIC17.69■□□□□ 0.42
LDB1Q86U70 AL590326.2-201ENST00000625139 305 ntBASIC17.69■□□□□ 0.42
LDB1Q86U70 ANKRD20A8P-203ENST00000641373 517 ntBASIC17.69■□□□□ 0.42
LDB1Q86U70 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
LDB1Q86U70 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC17.69■□□□□ 0.42
LDB1Q86U70 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.69■□□□□ 0.42
LDB1Q86U70 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LDB1Q86U70 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
LDB1Q86U70 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
LDB1Q86U70 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LDB1Q86U70 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC17.68■□□□□ 0.42
LDB1Q86U70 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LDB1Q86U70 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
LDB1Q86U70 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LDB1Q86U70 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.68■□□□□ 0.42
LDB1Q86U70 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC17.68■□□□□ 0.42
LDB1Q86U70 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.68■□□□□ 0.42
LDB1Q86U70 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
LDB1Q86U70 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.68■□□□□ 0.42
LDB1Q86U70 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LDB1Q86U70 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LDB1Q86U70 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LDB1Q86U70 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC17.68■□□□□ 0.42
LDB1Q86U70 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.68■□□□□ 0.42
LDB1Q86U70 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LDB1Q86U70 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LDB1Q86U70 AL845331.1-201ENST00000424978 1190 ntBASIC17.68■□□□□ 0.42
LDB1Q86U70 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC17.68■□□□□ 0.42
LDB1Q86U70 ISCU-203ENST00000431221 799 ntTSL 2 BASIC17.68■□□□□ 0.42
LDB1Q86U70 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
LDB1Q86U70 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC17.68■□□□□ 0.42
LDB1Q86U70 BOC-212ENST00000485230 2173 ntTSL 2 BASIC17.68■□□□□ 0.42
LDB1Q86U70 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
LDB1Q86U70 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.68■□□□□ 0.42
LDB1Q86U70 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC17.68■□□□□ 0.42
LDB1Q86U70 IGHV3-41-201ENST00000613121 348 ntBASIC17.68■□□□□ 0.42
LDB1Q86U70 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
LDB1Q86U70 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LDB1Q86U70 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LDB1Q86U70 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LDB1Q86U70 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
LDB1Q86U70 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
LDB1Q86U70 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 62.9 ms