Protein–RNA interactions for Protein: Q5T4S7

UBR4, E3 ubiquitin-protein ligase UBR4, humanhuman

Predictions only

Length 5,183 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4Q5T4S7 HDAC8-204ENST00000373560 819 ntTSL 3 BASIC9.57□□□□□ -0.88
UBR4Q5T4S7 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
UBR4Q5T4S7 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
UBR4Q5T4S7 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC9.57□□□□□ -0.88
UBR4Q5T4S7 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
UBR4Q5T4S7 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC9.57□□□□□ -0.88
UBR4Q5T4S7 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC9.57□□□□□ -0.88
UBR4Q5T4S7 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
UBR4Q5T4S7 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC9.57□□□□□ -0.88
UBR4Q5T4S7 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC9.57□□□□□ -0.88
UBR4Q5T4S7 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC9.57□□□□□ -0.88
UBR4Q5T4S7 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC9.57□□□□□ -0.88
UBR4Q5T4S7 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
UBR4Q5T4S7 AL391825.1-201ENST00000457671 1364 ntBASIC9.57□□□□□ -0.88
UBR4Q5T4S7 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC9.57□□□□□ -0.88
UBR4Q5T4S7 IDS-203ENST00000428056 1213 ntTSL 2 BASIC9.57□□□□□ -0.88
UBR4Q5T4S7 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC9.57□□□□□ -0.88
UBR4Q5T4S7 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC9.57□□□□□ -0.88
UBR4Q5T4S7 WASH4P-201ENST00000564273 1246 ntBASIC9.57□□□□□ -0.88
UBR4Q5T4S7 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
UBR4Q5T4S7 KATNBL1P6-202ENST00000562413 1466 ntBASIC9.57□□□□□ -0.88
UBR4Q5T4S7 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 CALR4P-201ENST00000431943 946 ntBASIC9.56□□□□□ -0.88
UBR4Q5T4S7 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 AC104989.1-201ENST00000519711 778 ntBASIC9.56□□□□□ -0.88
UBR4Q5T4S7 AC135586.1-201ENST00000539323 574 ntBASIC9.56□□□□□ -0.88
UBR4Q5T4S7 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 MIR1247-201ENST00000408206 136 ntBASIC9.56□□□□□ -0.88
UBR4Q5T4S7 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 USB1-202ENST00000423271 1217 ntTSL 2 BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 RPSAP52-203ENST00000622976 1023 ntBASIC9.56□□□□□ -0.88
UBR4Q5T4S7 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 SNX21-203ENST00000372541 771 ntTSL 2 BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 BRI3P1-201ENST00000440440 378 ntBASIC9.56□□□□□ -0.88
UBR4Q5T4S7 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC9.56□□□□□ -0.88
UBR4Q5T4S7 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC9.55□□□□□ -0.88
UBR4Q5T4S7 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC9.55□□□□□ -0.88
UBR4Q5T4S7 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
UBR4Q5T4S7 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC9.55□□□□□ -0.88
UBR4Q5T4S7 HNRNPA3P1-201ENST00000401429 1139 ntBASIC9.55□□□□□ -0.88
UBR4Q5T4S7 FAU-202ENST00000434372 533 ntTSL 2 BASIC9.55□□□□□ -0.88
UBR4Q5T4S7 AC104306.2-201ENST00000451877 341 ntBASIC9.55□□□□□ -0.88
UBR4Q5T4S7 HNRNPA3P5-201ENST00000455201 833 ntBASIC9.55□□□□□ -0.88
UBR4Q5T4S7 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC9.55□□□□□ -0.88
UBR4Q5T4S7 AC025048.3-201ENST00000590609 569 ntBASIC9.55□□□□□ -0.88
UBR4Q5T4S7 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC9.55□□□□□ -0.88
UBR4Q5T4S7 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC9.55□□□□□ -0.88
UBR4Q5T4S7 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC9.55□□□□□ -0.88
UBR4Q5T4S7 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC9.55□□□□□ -0.88
UBR4Q5T4S7 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC9.55□□□□□ -0.88
UBR4Q5T4S7 AC132938.6-201ENST00000623828 1655 ntBASIC9.55□□□□□ -0.88
UBR4Q5T4S7 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
UBR4Q5T4S7 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC9.55□□□□□ -0.88
UBR4Q5T4S7 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
UBR4Q5T4S7 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.88
UBR4Q5T4S7 AC087499.6-201ENST00000411576 835 ntBASIC9.55□□□□□ -0.88
UBR4Q5T4S7 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC9.55□□□□□ -0.88
UBR4Q5T4S7 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC9.55□□□□□ -0.88
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms