Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
CCDC144BQ3MJ40 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
CCDC144BQ3MJ40 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC144BQ3MJ40 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
CCDC144BQ3MJ40 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC20.58■□□□□ 0.88
CCDC144BQ3MJ40 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC144BQ3MJ40 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC144BQ3MJ40 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC144BQ3MJ40 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC20.57■□□□□ 0.88
CCDC144BQ3MJ40 IL9RP2-201ENST00000423948 1312 ntBASIC20.57■□□□□ 0.88
CCDC144BQ3MJ40 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC144BQ3MJ40 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC144BQ3MJ40 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
CCDC144BQ3MJ40 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC144BQ3MJ40 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC20.57■□□□□ 0.88
CCDC144BQ3MJ40 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC144BQ3MJ40 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
CCDC144BQ3MJ40 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC144BQ3MJ40 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC144BQ3MJ40 AC132008.2-207ENST00000454517 770 ntBASIC20.57■□□□□ 0.88
CCDC144BQ3MJ40 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC20.57■□□□□ 0.88
CCDC144BQ3MJ40 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC144BQ3MJ40 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC20.57■□□□□ 0.88
CCDC144BQ3MJ40 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC20.57■□□□□ 0.88
CCDC144BQ3MJ40 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC20.57■□□□□ 0.88
CCDC144BQ3MJ40 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC144BQ3MJ40 ANKRD20A8P-203ENST00000641373 517 ntBASIC20.57■□□□□ 0.88
CCDC144BQ3MJ40 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
CCDC144BQ3MJ40 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC144BQ3MJ40 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
CCDC144BQ3MJ40 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC20.57■□□□□ 0.88
CCDC144BQ3MJ40 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC20.57■□□□□ 0.88
CCDC144BQ3MJ40 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC144BQ3MJ40 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
CCDC144BQ3MJ40 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
CCDC144BQ3MJ40 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC144BQ3MJ40 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC144BQ3MJ40 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC144BQ3MJ40 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
CCDC144BQ3MJ40 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
CCDC144BQ3MJ40 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC144BQ3MJ40 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC144BQ3MJ40 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC144BQ3MJ40 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC144BQ3MJ40 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC20.56■□□□□ 0.88
CCDC144BQ3MJ40 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC144BQ3MJ40 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC144BQ3MJ40 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC144BQ3MJ40 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC144BQ3MJ40 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
CCDC144BQ3MJ40 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC144BQ3MJ40 MED22-202ENST00000371999 987 ntTSL 3 BASIC20.56■□□□□ 0.88
CCDC144BQ3MJ40 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC144BQ3MJ40 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC20.56■□□□□ 0.88
CCDC144BQ3MJ40 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC144BQ3MJ40 AC148477.8-201ENST00000624298 468 ntBASIC20.56■□□□□ 0.88
CCDC144BQ3MJ40 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC144BQ3MJ40 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC144BQ3MJ40 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC20.56■□□□□ 0.88
CCDC144BQ3MJ40 AC012317.2-201ENST00000623305 2251 ntBASIC20.56■□□□□ 0.88
CCDC144BQ3MJ40 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC144BQ3MJ40 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC144BQ3MJ40 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC20.56■□□□□ 0.88
CCDC144BQ3MJ40 AC009102.3-201ENST00000623118 1491 ntBASIC20.56■□□□□ 0.88
CCDC144BQ3MJ40 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC144BQ3MJ40 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC144BQ3MJ40 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC144BQ3MJ40 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC144BQ3MJ40 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CCDC144BQ3MJ40 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC144BQ3MJ40 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC144BQ3MJ40 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC144BQ3MJ40 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC20.55■□□□□ 0.88
CCDC144BQ3MJ40 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC20.55■□□□□ 0.88
CCDC144BQ3MJ40 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC144BQ3MJ40 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
CCDC144BQ3MJ40 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC144BQ3MJ40 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC20.55■□□□□ 0.88
CCDC144BQ3MJ40 AL031284.1-201ENST00000419297 478 ntBASIC20.55■□□□□ 0.88
CCDC144BQ3MJ40 KRT18P67-201ENST00000432816 1264 ntBASIC20.55■□□□□ 0.88
CCDC144BQ3MJ40 THAP5-204ENST00000438865 868 ntTSL 2 BASIC20.55■□□□□ 0.88
CCDC144BQ3MJ40 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC144BQ3MJ40 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC20.55■□□□□ 0.88
CCDC144BQ3MJ40 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC20.55■□□□□ 0.88
CCDC144BQ3MJ40 REXO1L9P-201ENST00000604264 2108 ntBASIC20.55■□□□□ 0.88
CCDC144BQ3MJ40 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC20.55■□□□□ 0.88
CCDC144BQ3MJ40 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC144BQ3MJ40 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC144BQ3MJ40 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CCDC144BQ3MJ40 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC144BQ3MJ40 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC20.55■□□□□ 0.88
CCDC144BQ3MJ40 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
CCDC144BQ3MJ40 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC144BQ3MJ40 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC20.55■□□□□ 0.88
CCDC144BQ3MJ40 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC20.55■□□□□ 0.88
CCDC144BQ3MJ40 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC20.54■□□□□ 0.88
CCDC144BQ3MJ40 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC144BQ3MJ40 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC144BQ3MJ40 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC144BQ3MJ40 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms