Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CHD9Q3L8U1 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CHD9Q3L8U1 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CHD9Q3L8U1 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC18.61■□□□□ 0.57
CHD9Q3L8U1 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
CHD9Q3L8U1 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHD9Q3L8U1 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
CHD9Q3L8U1 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC18.61■□□□□ 0.57
CHD9Q3L8U1 AC069335.1-201ENST00000489972 472 ntBASIC18.61■□□□□ 0.57
CHD9Q3L8U1 AL596325.1-201ENST00000563991 1082 ntBASIC18.61■□□□□ 0.57
CHD9Q3L8U1 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC18.61■□□□□ 0.57
CHD9Q3L8U1 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CHD9Q3L8U1 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHD9Q3L8U1 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC18.61■□□□□ 0.57
CHD9Q3L8U1 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CHD9Q3L8U1 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHD9Q3L8U1 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18.61■□□□□ 0.57
CHD9Q3L8U1 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHD9Q3L8U1 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.61■□□□□ 0.57
CHD9Q3L8U1 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHD9Q3L8U1 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHD9Q3L8U1 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC18.61■□□□□ 0.57
CHD9Q3L8U1 AC112191.1-201ENST00000523689 701 ntBASIC18.61■□□□□ 0.57
CHD9Q3L8U1 COQ9-214ENST00000567933 882 ntTSL 3 BASIC18.61■□□□□ 0.57
CHD9Q3L8U1 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CHD9Q3L8U1 AC008677.1-201ENST00000519230 1561 ntBASIC18.61■□□□□ 0.57
CHD9Q3L8U1 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC18.61■□□□□ 0.57
CHD9Q3L8U1 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC18.61■□□□□ 0.57
CHD9Q3L8U1 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC18.61■□□□□ 0.57
CHD9Q3L8U1 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHD9Q3L8U1 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CHD9Q3L8U1 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHD9Q3L8U1 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHD9Q3L8U1 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC18.6■□□□□ 0.57
CHD9Q3L8U1 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHD9Q3L8U1 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CHD9Q3L8U1 LINC02560-201ENST00000596379 459 ntBASIC18.6■□□□□ 0.57
CHD9Q3L8U1 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC18.6■□□□□ 0.57
CHD9Q3L8U1 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CHD9Q3L8U1 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHD9Q3L8U1 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CHD9Q3L8U1 ANO7L1-203ENST00000602586 1720 ntBASIC18.6■□□□□ 0.57
CHD9Q3L8U1 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CHD9Q3L8U1 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHD9Q3L8U1 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
CHD9Q3L8U1 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHD9Q3L8U1 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHD9Q3L8U1 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC18.6■□□□□ 0.57
CHD9Q3L8U1 NKTR-203ENST00000442970 646 ntTSL 2 BASIC18.6■□□□□ 0.57
CHD9Q3L8U1 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CHD9Q3L8U1 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
CHD9Q3L8U1 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC18.6■□□□□ 0.57
CHD9Q3L8U1 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHD9Q3L8U1 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CHD9Q3L8U1 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC18.6■□□□□ 0.57
CHD9Q3L8U1 BASP1P1-201ENST00000430708 665 ntBASIC18.6■□□□□ 0.57
CHD9Q3L8U1 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHD9Q3L8U1 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHD9Q3L8U1 GGTLC5P-201ENST00000617623 998 ntBASIC18.6■□□□□ 0.57
CHD9Q3L8U1 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHD9Q3L8U1 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHD9Q3L8U1 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.59■□□□□ 0.57
CHD9Q3L8U1 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CHD9Q3L8U1 GNAS-203ENST00000306120 1878 ntBASIC18.59■□□□□ 0.57
CHD9Q3L8U1 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CHD9Q3L8U1 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.59■□□□□ 0.57
CHD9Q3L8U1 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHD9Q3L8U1 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC18.59■□□□□ 0.57
CHD9Q3L8U1 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC18.59■□□□□ 0.57
CHD9Q3L8U1 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC18.59■□□□□ 0.57
CHD9Q3L8U1 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CHD9Q3L8U1 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CHD9Q3L8U1 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CHD9Q3L8U1 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC18.59■□□□□ 0.57
CHD9Q3L8U1 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC18.59■□□□□ 0.57
CHD9Q3L8U1 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
CHD9Q3L8U1 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC18.59■□□□□ 0.57
CHD9Q3L8U1 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC18.59■□□□□ 0.57
CHD9Q3L8U1 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC18.59■□□□□ 0.57
CHD9Q3L8U1 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHD9Q3L8U1 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC18.59■□□□□ 0.57
CHD9Q3L8U1 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHD9Q3L8U1 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC18.59■□□□□ 0.57
CHD9Q3L8U1 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHD9Q3L8U1 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC18.59■□□□□ 0.57
CHD9Q3L8U1 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.59■□□□□ 0.57
CHD9Q3L8U1 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18.58■□□□□ 0.57
CHD9Q3L8U1 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CHD9Q3L8U1 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CHD9Q3L8U1 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC18.58■□□□□ 0.57
CHD9Q3L8U1 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC18.58■□□□□ 0.57
CHD9Q3L8U1 AC140658.5-201ENST00000438532 169 ntBASIC18.58■□□□□ 0.57
CHD9Q3L8U1 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC18.58■□□□□ 0.57
CHD9Q3L8U1 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC18.58■□□□□ 0.57
CHD9Q3L8U1 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
CHD9Q3L8U1 AL359881.2-201ENST00000602973 570 ntBASIC18.58■□□□□ 0.57
CHD9Q3L8U1 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
CHD9Q3L8U1 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CHD9Q3L8U1 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
CHD9Q3L8U1 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms