Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
ABCA4P78363 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC15.22■□□□□ 0.03
ABCA4P78363 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
ABCA4P78363 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC15.22■□□□□ 0.03
ABCA4P78363 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC15.22■□□□□ 0.03
ABCA4P78363 AL078644.1-201ENST00000609881 752 ntBASIC15.22■□□□□ 0.03
ABCA4P78363 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
ABCA4P78363 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
ABCA4P78363 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ABCA4P78363 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC15.21■□□□□ 0.03
ABCA4P78363 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ABCA4P78363 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC15.21■□□□□ 0.03
ABCA4P78363 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC15.21■□□□□ 0.03
ABCA4P78363 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC15.21■□□□□ 0.03
ABCA4P78363 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
ABCA4P78363 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
ABCA4P78363 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ABCA4P78363 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC15.21■□□□□ 0.03
ABCA4P78363 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC15.21■□□□□ 0.03
ABCA4P78363 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
ABCA4P78363 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC15.21■□□□□ 0.03
ABCA4P78363 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC15.21■□□□□ 0.03
ABCA4P78363 VN2R19P-201ENST00000442399 1052 ntBASIC15.21■□□□□ 0.03
ABCA4P78363 ARTN-206ENST00000472435 402 ntTSL 3 BASIC15.21■□□□□ 0.03
ABCA4P78363 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC15.21■□□□□ 0.03
ABCA4P78363 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
ABCA4P78363 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC15.21■□□□□ 0.03
ABCA4P78363 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
ABCA4P78363 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC15.21■□□□□ 0.03
ABCA4P78363 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
ABCA4P78363 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC15.21■□□□□ 0.03
ABCA4P78363 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ABCA4P78363 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC15.21■□□□□ 0.03
ABCA4P78363 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.02
ABCA4P78363 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
ABCA4P78363 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
ABCA4P78363 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
ABCA4P78363 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
ABCA4P78363 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC15.21■□□□□ 0.02
ABCA4P78363 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC15.21■□□□□ 0.02
ABCA4P78363 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
ABCA4P78363 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC15.21■□□□□ 0.02
ABCA4P78363 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
ABCA4P78363 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
ABCA4P78363 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
ABCA4P78363 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC15.2■□□□□ 0.02
ABCA4P78363 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC15.2■□□□□ 0.02
ABCA4P78363 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC15.2■□□□□ 0.02
ABCA4P78363 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC15.2■□□□□ 0.02
ABCA4P78363 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
ABCA4P78363 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
ABCA4P78363 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
ABCA4P78363 NCF1C-201ENST00000438382 1427 ntBASIC15.2■□□□□ 0.02
ABCA4P78363 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC15.2■□□□□ 0.02
ABCA4P78363 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
ABCA4P78363 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
ABCA4P78363 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
ABCA4P78363 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC15.2■□□□□ 0.02
ABCA4P78363 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
ABCA4P78363 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC15.2■□□□□ 0.02
ABCA4P78363 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
ABCA4P78363 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
ABCA4P78363 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
ABCA4P78363 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC15.2■□□□□ 0.02
ABCA4P78363 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC15.2■□□□□ 0.02
ABCA4P78363 AC254562.1-201ENST00000417586 456 ntBASIC15.2■□□□□ 0.02
ABCA4P78363 AC122714.2-201ENST00000502787 707 ntBASIC15.2■□□□□ 0.02
ABCA4P78363 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC15.2■□□□□ 0.02
ABCA4P78363 COX5A-206ENST00000568783 571 ntTSL 3 BASIC15.2■□□□□ 0.02
ABCA4P78363 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
ABCA4P78363 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
ABCA4P78363 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC15.2■□□□□ 0.02
ABCA4P78363 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
ABCA4P78363 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
ABCA4P78363 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC15.2■□□□□ 0.02
ABCA4P78363 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC15.2■□□□□ 0.02
ABCA4P78363 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
ABCA4P78363 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
ABCA4P78363 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC15.19■□□□□ 0.02
ABCA4P78363 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
ABCA4P78363 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC15.19■□□□□ 0.02
ABCA4P78363 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
ABCA4P78363 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC15.19■□□□□ 0.02
ABCA4P78363 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC15.19■□□□□ 0.02
ABCA4P78363 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC15.19■□□□□ 0.02
ABCA4P78363 SPCS2P1-201ENST00000561636 679 ntBASIC15.19■□□□□ 0.02
ABCA4P78363 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
ABCA4P78363 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC15.19■□□□□ 0.02
ABCA4P78363 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
ABCA4P78363 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
ABCA4P78363 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
ABCA4P78363 PXK-206ENST00000463280 2825 ntTSL 2 BASIC15.19■□□□□ 0.02
ABCA4P78363 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
ABCA4P78363 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
ABCA4P78363 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
ABCA4P78363 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
ABCA4P78363 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC15.19■□□□□ 0.02
ABCA4P78363 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
ABCA4P78363 ADM-208ENST00000534464 1640 ntTSL 2 BASIC15.19■□□□□ 0.02
ABCA4P78363 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms