Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC16.42■□□□□ 0.22
RNF4P78317 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
RNF4P78317 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
RNF4P78317 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC16.42■□□□□ 0.22
RNF4P78317 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
RNF4P78317 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
RNF4P78317 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
RNF4P78317 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
RNF4P78317 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
RNF4P78317 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC16.42■□□□□ 0.22
RNF4P78317 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
RNF4P78317 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
RNF4P78317 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
RNF4P78317 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC16.42■□□□□ 0.22
RNF4P78317 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
RNF4P78317 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
RNF4P78317 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
RNF4P78317 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RNF4P78317 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC16.41■□□□□ 0.22
RNF4P78317 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RNF4P78317 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
RNF4P78317 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
RNF4P78317 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC16.41■□□□□ 0.22
RNF4P78317 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
RNF4P78317 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RNF4P78317 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
RNF4P78317 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RNF4P78317 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC16.41■□□□□ 0.22
RNF4P78317 HTR7P1-202ENST00000624664 4411 ntBASIC16.41■□□□□ 0.22
RNF4P78317 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC16.41■□□□□ 0.22
RNF4P78317 BX276092.7-203ENST00000637198 1536 ntBASIC16.41■□□□□ 0.22
RNF4P78317 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RNF4P78317 AC004870.1-201ENST00000315132 882 ntBASIC16.41■□□□□ 0.22
RNF4P78317 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
RNF4P78317 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RNF4P78317 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RNF4P78317 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
RNF4P78317 EMBP1-201ENST00000458200 901 ntBASIC16.41■□□□□ 0.22
RNF4P78317 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC16.41■□□□□ 0.22
RNF4P78317 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC16.41■□□□□ 0.22
RNF4P78317 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC16.41■□□□□ 0.22
RNF4P78317 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC16.41■□□□□ 0.22
RNF4P78317 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC16.41■□□□□ 0.22
RNF4P78317 REXO1L6P-202ENST00000619970 1078 ntBASIC16.41■□□□□ 0.22
RNF4P78317 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RNF4P78317 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC16.41■□□□□ 0.22
RNF4P78317 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RNF4P78317 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RNF4P78317 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
RNF4P78317 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RNF4P78317 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC16.41■□□□□ 0.22
RNF4P78317 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
RNF4P78317 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RNF4P78317 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RNF4P78317 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
RNF4P78317 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RNF4P78317 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RNF4P78317 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RNF4P78317 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.41■□□□□ 0.22
RNF4P78317 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RNF4P78317 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RNF4P78317 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RNF4P78317 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RNF4P78317 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RNF4P78317 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
RNF4P78317 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RNF4P78317 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RNF4P78317 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC16.4■□□□□ 0.22
RNF4P78317 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
RNF4P78317 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RNF4P78317 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RNF4P78317 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RNF4P78317 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RNF4P78317 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RNF4P78317 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC16.4■□□□□ 0.22
RNF4P78317 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC16.4■□□□□ 0.22
RNF4P78317 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
RNF4P78317 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RNF4P78317 SLC25A6P5-201ENST00000435663 894 ntBASIC16.4■□□□□ 0.22
RNF4P78317 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RNF4P78317 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC16.4■□□□□ 0.22
RNF4P78317 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
RNF4P78317 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
RNF4P78317 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC16.4■□□□□ 0.22
RNF4P78317 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC16.4■□□□□ 0.22
RNF4P78317 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RNF4P78317 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.4■□□□□ 0.22
RNF4P78317 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC16.4■□□□□ 0.22
RNF4P78317 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RNF4P78317 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC16.4■□□□□ 0.22
RNF4P78317 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
RNF4P78317 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RNF4P78317 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC16.4■□□□□ 0.22
RNF4P78317 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC16.4■□□□□ 0.22
RNF4P78317 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
RNF4P78317 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.22
RNF4P78317 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
RNF4P78317 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
RNF4P78317 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
RNF4P78317 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms