Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
PKNOX1P55347 AL355312.1-201ENST00000407115 2176 ntBASIC17.43■□□□□ 0.38
PKNOX1P55347 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC17.43■□□□□ 0.38
PKNOX1P55347 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
PKNOX1P55347 KRT18P22-201ENST00000402024 1347 ntBASIC17.43■□□□□ 0.38
PKNOX1P55347 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.43■□□□□ 0.38
PKNOX1P55347 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
PKNOX1P55347 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
PKNOX1P55347 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
PKNOX1P55347 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PKNOX1P55347 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PKNOX1P55347 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.42■□□□□ 0.38
PKNOX1P55347 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
PKNOX1P55347 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
PKNOX1P55347 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC17.42■□□□□ 0.38
PKNOX1P55347 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC17.42■□□□□ 0.38
PKNOX1P55347 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.42■□□□□ 0.38
PKNOX1P55347 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PKNOX1P55347 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PKNOX1P55347 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PKNOX1P55347 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
PKNOX1P55347 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
PKNOX1P55347 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PKNOX1P55347 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC17.42■□□□□ 0.38
PKNOX1P55347 AC034232.1-201ENST00000506026 1064 ntBASIC17.42■□□□□ 0.38
PKNOX1P55347 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC17.42■□□□□ 0.38
PKNOX1P55347 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC17.42■□□□□ 0.38
PKNOX1P55347 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.42■□□□□ 0.38
PKNOX1P55347 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
PKNOX1P55347 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
PKNOX1P55347 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
PKNOX1P55347 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PKNOX1P55347 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC17.42■□□□□ 0.38
PKNOX1P55347 AC008894.3-201ENST00000624324 3103 ntBASIC17.42■□□□□ 0.38
PKNOX1P55347 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.42■□□□□ 0.38
PKNOX1P55347 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PKNOX1P55347 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
PKNOX1P55347 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PKNOX1P55347 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PKNOX1P55347 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
PKNOX1P55347 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC17.41■□□□□ 0.38
PKNOX1P55347 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC17.41■□□□□ 0.38
PKNOX1P55347 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PKNOX1P55347 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
PKNOX1P55347 AL138688.1-201ENST00000624851 1594 ntBASIC17.41■□□□□ 0.38
PKNOX1P55347 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.41■□□□□ 0.38
PKNOX1P55347 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.41■□□□□ 0.38
PKNOX1P55347 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PKNOX1P55347 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PKNOX1P55347 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PKNOX1P55347 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PKNOX1P55347 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
PKNOX1P55347 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC17.41■□□□□ 0.38
PKNOX1P55347 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
PKNOX1P55347 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC17.41■□□□□ 0.38
PKNOX1P55347 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PKNOX1P55347 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
PKNOX1P55347 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC17.41■□□□□ 0.38
PKNOX1P55347 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PKNOX1P55347 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.41■□□□□ 0.38
PKNOX1P55347 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC17.41■□□□□ 0.38
PKNOX1P55347 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC17.41■□□□□ 0.38
PKNOX1P55347 AC141257.4-201ENST00000634557 245 ntBASIC17.41■□□□□ 0.38
PKNOX1P55347 AC136944.6-201ENST00000634818 245 ntBASIC17.41■□□□□ 0.38
PKNOX1P55347 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
PKNOX1P55347 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC17.41■□□□□ 0.38
PKNOX1P55347 KRT89P-201ENST00000620027 1478 ntBASIC17.41■□□□□ 0.38
PKNOX1P55347 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
PKNOX1P55347 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.41■□□□□ 0.38
PKNOX1P55347 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC17.41■□□□□ 0.38
PKNOX1P55347 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PKNOX1P55347 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PKNOX1P55347 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
PKNOX1P55347 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.41■□□□□ 0.38
PKNOX1P55347 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.41■□□□□ 0.38
PKNOX1P55347 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
PKNOX1P55347 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
PKNOX1P55347 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.41■□□□□ 0.38
PKNOX1P55347 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PKNOX1P55347 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PKNOX1P55347 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PKNOX1P55347 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PKNOX1P55347 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
PKNOX1P55347 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
PKNOX1P55347 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PKNOX1P55347 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
PKNOX1P55347 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC17.4■□□□□ 0.38
PKNOX1P55347 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PKNOX1P55347 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.4■□□□□ 0.38
PKNOX1P55347 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.4■□□□□ 0.38
PKNOX1P55347 AC018695.7-201ENST00000624587 2492 ntBASIC17.4■□□□□ 0.38
PKNOX1P55347 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PKNOX1P55347 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
PKNOX1P55347 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
PKNOX1P55347 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.4■□□□□ 0.38
PKNOX1P55347 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PKNOX1P55347 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC17.4■□□□□ 0.38
PKNOX1P55347 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PKNOX1P55347 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC17.4■□□□□ 0.38
PKNOX1P55347 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms