Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC16.84■□□□□ 0.29
LIM2P55344 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIM2P55344 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIM2P55344 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIM2P55344 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIM2P55344 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
LIM2P55344 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC16.84■□□□□ 0.29
LIM2P55344 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC16.84■□□□□ 0.29
LIM2P55344 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LIM2P55344 CEP83-AS1-201ENST00000623122 2482 ntBASIC16.84■□□□□ 0.29
LIM2P55344 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
LIM2P55344 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.29
LIM2P55344 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIM2P55344 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIM2P55344 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIM2P55344 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC16.83■□□□□ 0.28
LIM2P55344 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIM2P55344 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIM2P55344 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIM2P55344 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIM2P55344 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIM2P55344 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIM2P55344 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIM2P55344 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LIM2P55344 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
LIM2P55344 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIM2P55344 AC096633.1-201ENST00000422446 749 ntBASIC16.83■□□□□ 0.28
LIM2P55344 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
LIM2P55344 AC125634.1-201ENST00000438758 1403 ntBASIC16.83■□□□□ 0.28
LIM2P55344 DDX43P3-201ENST00000441064 443 ntBASIC16.83■□□□□ 0.28
LIM2P55344 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC16.83■□□□□ 0.28
LIM2P55344 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC16.83■□□□□ 0.28
LIM2P55344 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LIM2P55344 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC16.83■□□□□ 0.28
LIM2P55344 NMU-205ENST00000511469 756 ntTSL 3 BASIC16.83■□□□□ 0.28
LIM2P55344 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC16.83■□□□□ 0.28
LIM2P55344 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
LIM2P55344 TBC1D3P5-201ENST00000579401 1545 ntBASIC16.83■□□□□ 0.28
LIM2P55344 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LIM2P55344 AL138831.2-201ENST00000606564 490 ntBASIC16.83■□□□□ 0.28
LIM2P55344 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIM2P55344 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIM2P55344 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIM2P55344 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC16.82■□□□□ 0.28
LIM2P55344 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC16.82■□□□□ 0.28
LIM2P55344 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LIM2P55344 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC16.82■□□□□ 0.28
LIM2P55344 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIM2P55344 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC16.82■□□□□ 0.28
LIM2P55344 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIM2P55344 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIM2P55344 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIM2P55344 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
LIM2P55344 AC097374.2-201ENST00000618617 1306 ntBASIC16.82■□□□□ 0.28
LIM2P55344 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
LIM2P55344 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIM2P55344 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIM2P55344 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIM2P55344 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC16.82■□□□□ 0.28
LIM2P55344 KRT17P6-201ENST00000453795 1220 ntBASIC16.82■□□□□ 0.28
LIM2P55344 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC16.82■□□□□ 0.28
LIM2P55344 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC16.82■□□□□ 0.28
LIM2P55344 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIM2P55344 AP000867.3-201ENST00000524675 377 ntBASIC16.82■□□□□ 0.28
LIM2P55344 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIM2P55344 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC16.82■□□□□ 0.28
LIM2P55344 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
LIM2P55344 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
LIM2P55344 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC16.82■□□□□ 0.28
LIM2P55344 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
LIM2P55344 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LIM2P55344 AL645608.8-201ENST00000606034 2086 ntBASIC16.82■□□□□ 0.28
LIM2P55344 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
LIM2P55344 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC16.82■□□□□ 0.28
LIM2P55344 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC16.82■□□□□ 0.28
LIM2P55344 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LIM2P55344 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC16.81■□□□□ 0.28
LIM2P55344 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
LIM2P55344 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC16.81■□□□□ 0.28
LIM2P55344 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC16.81■□□□□ 0.28
LIM2P55344 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIM2P55344 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIM2P55344 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIM2P55344 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LIM2P55344 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIM2P55344 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC16.81■□□□□ 0.28
LIM2P55344 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
LIM2P55344 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIM2P55344 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC16.81■□□□□ 0.28
LIM2P55344 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
LIM2P55344 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LIM2P55344 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC16.81■□□□□ 0.28
LIM2P55344 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC16.81■□□□□ 0.28
LIM2P55344 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC16.81■□□□□ 0.28
LIM2P55344 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
LIM2P55344 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC16.81■□□□□ 0.28
LIM2P55344 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
LIM2P55344 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC16.81■□□□□ 0.28
LIM2P55344 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIM2P55344 PP12613-201ENST00000424958 2230 ntBASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms