Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA3P55318 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA3P55318 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC13.35□□□□□ -0.27
FOXA3P55318 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC13.35□□□□□ -0.27
FOXA3P55318 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC13.35□□□□□ -0.27
FOXA3P55318 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA3P55318 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC13.35□□□□□ -0.27
FOXA3P55318 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA3P55318 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA3P55318 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC13.35□□□□□ -0.27
FOXA3P55318 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
FOXA3P55318 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA3P55318 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA3P55318 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
FOXA3P55318 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC13.35□□□□□ -0.27
FOXA3P55318 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA3P55318 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA3P55318 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC13.35□□□□□ -0.27
FOXA3P55318 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
FOXA3P55318 CDCA4P2-201ENST00000441182 718 ntBASIC13.35□□□□□ -0.27
FOXA3P55318 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC13.35□□□□□ -0.27
FOXA3P55318 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA3P55318 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC13.35□□□□□ -0.27
FOXA3P55318 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
FOXA3P55318 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC13.35□□□□□ -0.27
FOXA3P55318 CKBP1-201ENST00000565489 1086 ntBASIC13.35□□□□□ -0.27
FOXA3P55318 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC13.35□□□□□ -0.27
FOXA3P55318 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC13.35□□□□□ -0.27
FOXA3P55318 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC13.35□□□□□ -0.27
FOXA3P55318 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC13.35□□□□□ -0.27
FOXA3P55318 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
FOXA3P55318 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC13.35□□□□□ -0.27
FOXA3P55318 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC13.35□□□□□ -0.27
FOXA3P55318 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
FOXA3P55318 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA3P55318 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA3P55318 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC13.35□□□□□ -0.27
FOXA3P55318 LINC01126-201ENST00000623515 1646 ntBASIC13.35□□□□□ -0.27
FOXA3P55318 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC13.35□□□□□ -0.27
FOXA3P55318 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC13.35□□□□□ -0.27
FOXA3P55318 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC13.35□□□□□ -0.27
FOXA3P55318 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA3P55318 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA3P55318 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
FOXA3P55318 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA3P55318 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
FOXA3P55318 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC13.34□□□□□ -0.27
FOXA3P55318 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA3P55318 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA3P55318 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA3P55318 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
FOXA3P55318 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA3P55318 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA3P55318 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA3P55318 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC13.34□□□□□ -0.27
FOXA3P55318 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC13.34□□□□□ -0.27
FOXA3P55318 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC13.34□□□□□ -0.27
FOXA3P55318 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA3P55318 UROS-202ENST00000368778 1556 ntTSL 2 BASIC13.34□□□□□ -0.27
FOXA3P55318 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC13.34□□□□□ -0.27
FOXA3P55318 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA3P55318 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA3P55318 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
FOXA3P55318 AC091390.4-202ENST00000476426 537 ntBASIC13.34□□□□□ -0.27
FOXA3P55318 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC13.34□□□□□ -0.27
FOXA3P55318 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC13.34□□□□□ -0.27
FOXA3P55318 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC13.34□□□□□ -0.27
FOXA3P55318 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC13.34□□□□□ -0.27
FOXA3P55318 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC13.34□□□□□ -0.27
FOXA3P55318 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC13.34□□□□□ -0.27
FOXA3P55318 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC13.34□□□□□ -0.27
FOXA3P55318 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC13.34□□□□□ -0.27
FOXA3P55318 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA3P55318 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA3P55318 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA3P55318 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC13.34□□□□□ -0.27
FOXA3P55318 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA3P55318 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC13.34□□□□□ -0.27
FOXA3P55318 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA3P55318 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA3P55318 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA3P55318 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA3P55318 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
FOXA3P55318 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC13.34□□□□□ -0.27
FOXA3P55318 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
FOXA3P55318 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.27
FOXA3P55318 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.27
FOXA3P55318 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
FOXA3P55318 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC13.33□□□□□ -0.27
FOXA3P55318 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC13.33□□□□□ -0.27
FOXA3P55318 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC13.33□□□□□ -0.28
FOXA3P55318 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA3P55318 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
FOXA3P55318 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
FOXA3P55318 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA3P55318 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
FOXA3P55318 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA3P55318 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA3P55318 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA3P55318 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms