Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIG3P49916 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC18.67■□□□□ 0.58
LIG3P49916 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LIG3P49916 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIG3P49916 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
LIG3P49916 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIG3P49916 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
LIG3P49916 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIG3P49916 MIR564-202ENST00000385049 94 ntBASIC18.67■□□□□ 0.58
LIG3P49916 GRAMD4P1-201ENST00000435181 1110 ntBASIC18.67■□□□□ 0.58
LIG3P49916 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC18.67■□□□□ 0.58
LIG3P49916 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC18.67■□□□□ 0.58
LIG3P49916 SNX5-210ENST00000481323 562 ntTSL 3 BASIC18.67■□□□□ 0.58
LIG3P49916 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LIG3P49916 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC18.67■□□□□ 0.58
LIG3P49916 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC18.67■□□□□ 0.58
LIG3P49916 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
LIG3P49916 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIG3P49916 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
LIG3P49916 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LIG3P49916 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC18.67■□□□□ 0.58
LIG3P49916 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIG3P49916 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIG3P49916 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIG3P49916 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIG3P49916 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
LIG3P49916 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIG3P49916 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC18.66■□□□□ 0.58
LIG3P49916 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIG3P49916 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC18.66■□□□□ 0.58
LIG3P49916 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIG3P49916 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIG3P49916 CROCCP1-201ENST00000426910 5675 ntBASIC18.66■□□□□ 0.58
LIG3P49916 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIG3P49916 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
LIG3P49916 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC18.66■□□□□ 0.58
LIG3P49916 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIG3P49916 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIG3P49916 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIG3P49916 ELP6-205ENST00000439305 880 ntTSL 2 BASIC18.66■□□□□ 0.58
LIG3P49916 KRT18P38-201ENST00000449496 1282 ntBASIC18.66■□□□□ 0.58
LIG3P49916 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC18.66■□□□□ 0.58
LIG3P49916 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIG3P49916 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC18.66■□□□□ 0.58
LIG3P49916 CD81-212ENST00000526072 1172 ntTSL 5 BASIC18.66■□□□□ 0.58
LIG3P49916 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIG3P49916 TPM1-226ENST00000560959 925 ntTSL 2 BASIC18.66■□□□□ 0.58
LIG3P49916 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC18.66■□□□□ 0.58
LIG3P49916 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC18.66■□□□□ 0.58
LIG3P49916 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIG3P49916 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC18.66■□□□□ 0.58
LIG3P49916 AC112497.1-201ENST00000624824 639 ntBASIC18.66■□□□□ 0.58
LIG3P49916 MYC-208ENST00000641036 567 ntBASIC18.66■□□□□ 0.58
LIG3P49916 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
LIG3P49916 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC18.66■□□□□ 0.58
LIG3P49916 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIG3P49916 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIG3P49916 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC18.66■□□□□ 0.58
LIG3P49916 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIG3P49916 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIG3P49916 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
LIG3P49916 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIG3P49916 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC18.66■□□□□ 0.58
LIG3P49916 HR-201ENST00000312841 5351 ntTSL 5 BASIC18.65■□□□□ 0.58
LIG3P49916 AC008741.2-201ENST00000612792 3115 ntBASIC18.65■□□□□ 0.58
LIG3P49916 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.65■□□□□ 0.58
LIG3P49916 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
LIG3P49916 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIG3P49916 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIG3P49916 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LIG3P49916 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIG3P49916 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIG3P49916 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIG3P49916 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC18.65■□□□□ 0.58
LIG3P49916 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
LIG3P49916 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIG3P49916 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIG3P49916 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LIG3P49916 SLC25A6P5-201ENST00000435663 894 ntBASIC18.65■□□□□ 0.58
LIG3P49916 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIG3P49916 RNF146-204ENST00000476956 884 ntTSL 2 BASIC18.65■□□□□ 0.58
LIG3P49916 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC18.65■□□□□ 0.58
LIG3P49916 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIG3P49916 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC18.65■□□□□ 0.58
LIG3P49916 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC18.65■□□□□ 0.58
LIG3P49916 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIG3P49916 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
LIG3P49916 HEIH-201ENST00000623091 1652 ntBASIC18.65■□□□□ 0.58
LIG3P49916 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC18.65■□□□□ 0.58
LIG3P49916 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
LIG3P49916 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC18.65■□□□□ 0.58
LIG3P49916 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC18.65■□□□□ 0.58
LIG3P49916 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIG3P49916 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIG3P49916 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIG3P49916 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
LIG3P49916 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIG3P49916 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIG3P49916 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIG3P49916 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms