Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 WDR6-223ENST00000627177 207 ntTSL 2 BASIC17.23■□□□□ 0.35
HNF4AP41235 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HNF4AP41235 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
HNF4AP41235 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HNF4AP41235 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
HNF4AP41235 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HNF4AP41235 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
HNF4AP41235 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.23■□□□□ 0.35
HNF4AP41235 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
HNF4AP41235 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
HNF4AP41235 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
HNF4AP41235 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.22■□□□□ 0.35
HNF4AP41235 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HNF4AP41235 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HNF4AP41235 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HNF4AP41235 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.22■□□□□ 0.35
HNF4AP41235 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
HNF4AP41235 BAALC-202ENST00000306391 243 ntTSL 5 BASIC17.22■□□□□ 0.35
HNF4AP41235 BAALC-204ENST00000330955 222 ntTSL 5 BASIC17.22■□□□□ 0.35
HNF4AP41235 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HNF4AP41235 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HNF4AP41235 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.22■□□□□ 0.35
HNF4AP41235 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
HNF4AP41235 AC112698.1-201ENST00000510299 916 ntBASIC17.22■□□□□ 0.35
HNF4AP41235 PTK2-216ENST00000519881 863 ntTSL 3 BASIC17.22■□□□□ 0.35
HNF4AP41235 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC17.22■□□□□ 0.35
HNF4AP41235 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC17.22■□□□□ 0.35
HNF4AP41235 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC17.22■□□□□ 0.35
HNF4AP41235 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC17.22■□□□□ 0.35
HNF4AP41235 AC011498.5-201ENST00000592027 486 ntBASIC17.22■□□□□ 0.35
HNF4AP41235 AL358472.4-201ENST00000633140 710 ntBASIC17.22■□□□□ 0.35
HNF4AP41235 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC17.22■□□□□ 0.35
HNF4AP41235 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.22■□□□□ 0.35
HNF4AP41235 KRT8P47-201ENST00000604727 1398 ntBASIC17.22■□□□□ 0.35
HNF4AP41235 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
HNF4AP41235 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HNF4AP41235 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HNF4AP41235 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
HNF4AP41235 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.22■□□□□ 0.35
HNF4AP41235 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HNF4AP41235 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HNF4AP41235 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HNF4AP41235 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HNF4AP41235 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HNF4AP41235 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
HNF4AP41235 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HNF4AP41235 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC17.21■□□□□ 0.35
HNF4AP41235 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
HNF4AP41235 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
HNF4AP41235 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.21■□□□□ 0.35
HNF4AP41235 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
HNF4AP41235 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HNF4AP41235 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HNF4AP41235 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
HNF4AP41235 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HNF4AP41235 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.21■□□□□ 0.35
HNF4AP41235 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HNF4AP41235 TSPY22P-201ENST00000427496 604 ntBASIC17.21■□□□□ 0.35
HNF4AP41235 RNF146-204ENST00000476956 884 ntTSL 2 BASIC17.21■□□□□ 0.35
HNF4AP41235 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC17.21■□□□□ 0.35
HNF4AP41235 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HNF4AP41235 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
HNF4AP41235 AL390719.2-201ENST00000606993 987 ntBASIC17.21■□□□□ 0.35
HNF4AP41235 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
HNF4AP41235 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HNF4AP41235 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HNF4AP41235 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
HNF4AP41235 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HNF4AP41235 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.21■□□□□ 0.35
HNF4AP41235 AC009949.1-201ENST00000623048 1830 ntBASIC17.21■□□□□ 0.35
HNF4AP41235 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
HNF4AP41235 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
HNF4AP41235 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
HNF4AP41235 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
HNF4AP41235 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
HNF4AP41235 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.34
HNF4AP41235 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HNF4AP41235 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HNF4AP41235 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.2■□□□□ 0.34
HNF4AP41235 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
HNF4AP41235 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HNF4AP41235 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
HNF4AP41235 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.2■□□□□ 0.34
HNF4AP41235 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
HNF4AP41235 IER3-202ENST00000376377 1350 ntBASIC17.2■□□□□ 0.34
HNF4AP41235 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
HNF4AP41235 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HNF4AP41235 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC17.2■□□□□ 0.34
HNF4AP41235 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HNF4AP41235 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HNF4AP41235 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
HNF4AP41235 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
HNF4AP41235 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC17.2■□□□□ 0.34
HNF4AP41235 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC17.2■□□□□ 0.34
HNF4AP41235 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC17.2■□□□□ 0.34
HNF4AP41235 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC17.2■□□□□ 0.34
HNF4AP41235 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
HNF4AP41235 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.2■□□□□ 0.34
HNF4AP41235 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.2■□□□□ 0.34
HNF4AP41235 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms