Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SOX3P41225 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.26
SOX3P41225 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SOX3P41225 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC16.7■□□□□ 0.26
SOX3P41225 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC16.7■□□□□ 0.26
SOX3P41225 AC138028.4-201ENST00000564984 1845 ntBASIC16.7■□□□□ 0.26
SOX3P41225 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC16.7■□□□□ 0.26
SOX3P41225 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SOX3P41225 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SOX3P41225 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC16.7■□□□□ 0.26
SOX3P41225 SIRPAP1-201ENST00000448467 1770 ntBASIC16.7■□□□□ 0.26
SOX3P41225 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SOX3P41225 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC16.7■□□□□ 0.26
SOX3P41225 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SOX3P41225 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SOX3P41225 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
SOX3P41225 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SOX3P41225 TOB2P1-201ENST00000469761 992 ntBASIC16.7■□□□□ 0.26
SOX3P41225 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
SOX3P41225 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC16.7■□□□□ 0.26
SOX3P41225 AC012313.10-201ENST00000623509 926 ntBASIC16.7■□□□□ 0.26
SOX3P41225 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SOX3P41225 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC16.7■□□□□ 0.26
SOX3P41225 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SOX3P41225 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
SOX3P41225 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SOX3P41225 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC16.7■□□□□ 0.26
SOX3P41225 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC16.7■□□□□ 0.26
SOX3P41225 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SOX3P41225 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SOX3P41225 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
SOX3P41225 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
SOX3P41225 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC16.7■□□□□ 0.26
SOX3P41225 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SOX3P41225 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
SOX3P41225 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SOX3P41225 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC16.7■□□□□ 0.26
SOX3P41225 AC093677.2-201ENST00000600169 1863 ntBASIC16.69■□□□□ 0.26
SOX3P41225 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SOX3P41225 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC16.69■□□□□ 0.26
SOX3P41225 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC16.69■□□□□ 0.26
SOX3P41225 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
SOX3P41225 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
SOX3P41225 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SOX3P41225 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SOX3P41225 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SOX3P41225 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SOX3P41225 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SOX3P41225 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SOX3P41225 DDT-203ENST00000403754 569 ntTSL 3 BASIC16.69■□□□□ 0.26
SOX3P41225 DDT-206ENST00000430101 573 ntTSL 2 BASIC16.69■□□□□ 0.26
SOX3P41225 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC16.69■□□□□ 0.26
SOX3P41225 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC16.69■□□□□ 0.26
SOX3P41225 RN7SL606P-201ENST00000472779 293 ntBASIC16.69■□□□□ 0.26
SOX3P41225 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SOX3P41225 AP000867.3-201ENST00000524675 377 ntBASIC16.69■□□□□ 0.26
SOX3P41225 TOLLIP-AS1-201ENST00000530897 939 ntBASIC16.69■□□□□ 0.26
SOX3P41225 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
SOX3P41225 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC16.69■□□□□ 0.26
SOX3P41225 MIR3652-201ENST00000579335 131 ntBASIC16.69■□□□□ 0.26
SOX3P41225 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC16.69■□□□□ 0.26
SOX3P41225 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC16.69■□□□□ 0.26
SOX3P41225 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SOX3P41225 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SOX3P41225 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SOX3P41225 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SOX3P41225 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
SOX3P41225 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SOX3P41225 AL645608.8-201ENST00000606034 2086 ntBASIC16.69■□□□□ 0.26
SOX3P41225 LINC00602-201ENST00000629776 2065 ntBASIC16.69■□□□□ 0.26
SOX3P41225 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SOX3P41225 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC16.69■□□□□ 0.26
SOX3P41225 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC16.69■□□□□ 0.26
SOX3P41225 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC16.69■□□□□ 0.26
SOX3P41225 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SOX3P41225 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SOX3P41225 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
SOX3P41225 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SOX3P41225 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC16.68■□□□□ 0.26
SOX3P41225 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SOX3P41225 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SOX3P41225 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC16.68■□□□□ 0.26
SOX3P41225 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
SOX3P41225 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SOX3P41225 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SOX3P41225 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
SOX3P41225 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC16.68■□□□□ 0.26
SOX3P41225 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SOX3P41225 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SOX3P41225 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SOX3P41225 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
SOX3P41225 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SOX3P41225 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SOX3P41225 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC16.68■□□□□ 0.26
SOX3P41225 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC16.68■□□□□ 0.26
SOX3P41225 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SOX3P41225 TSPY12P-201ENST00000421279 868 ntBASIC16.68■□□□□ 0.26
SOX3P41225 DUSP5P1-201ENST00000441325 1139 ntBASIC16.68■□□□□ 0.26
SOX3P41225 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC16.68■□□□□ 0.26
SOX3P41225 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms