Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
BRCA1P38398 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
BRCA1P38398 AC005237.2-201ENST00000434368 219 ntBASIC21.37■■□□□ 1.01
BRCA1P38398 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
BRCA1P38398 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC21.37■■□□□ 1.01
BRCA1P38398 BSG-214ENST00000614867 960 ntTSL 3 BASIC21.37■■□□□ 1.01
BRCA1P38398 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC21.36■■□□□ 1.01
BRCA1P38398 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
BRCA1P38398 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
BRCA1P38398 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
BRCA1P38398 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC21.36■■□□□ 1.01
BRCA1P38398 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
BRCA1P38398 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
BRCA1P38398 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
BRCA1P38398 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
BRCA1P38398 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC21.36■■□□□ 1.01
BRCA1P38398 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC21.36■■□□□ 1.01
BRCA1P38398 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC21.36■■□□□ 1.01
BRCA1P38398 CR383656.12-201ENST00000549567 513 ntBASIC21.36■■□□□ 1.01
BRCA1P38398 AL596325.1-201ENST00000563991 1082 ntBASIC21.36■■□□□ 1.01
BRCA1P38398 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC21.36■■□□□ 1.01
BRCA1P38398 AC129492.6-201ENST00000611383 1305 ntBASIC21.36■■□□□ 1.01
BRCA1P38398 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
BRCA1P38398 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
BRCA1P38398 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
BRCA1P38398 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
BRCA1P38398 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC21.36■■□□□ 1.01
BRCA1P38398 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
BRCA1P38398 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
BRCA1P38398 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
BRCA1P38398 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
BRCA1P38398 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC21.36■■□□□ 1.01
BRCA1P38398 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
BRCA1P38398 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC21.35■■□□□ 1.01
BRCA1P38398 FLYWCH1P1-201ENST00000460917 1874 ntBASIC21.35■■□□□ 1.01
BRCA1P38398 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC21.35■■□□□ 1.01
BRCA1P38398 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC21.35■■□□□ 1.01
BRCA1P38398 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
BRCA1P38398 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
BRCA1P38398 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC21.35■■□□□ 1.01
BRCA1P38398 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
BRCA1P38398 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
BRCA1P38398 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
BRCA1P38398 PI4KAP1-204ENST00000612579 1703 ntBASIC21.35■■□□□ 1.01
BRCA1P38398 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
BRCA1P38398 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
BRCA1P38398 GNAS-203ENST00000306120 1878 ntBASIC21.35■■□□□ 1.01
BRCA1P38398 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
BRCA1P38398 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
BRCA1P38398 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
BRCA1P38398 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC21.35■■□□□ 1.01
BRCA1P38398 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
BRCA1P38398 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
BRCA1P38398 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
BRCA1P38398 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
BRCA1P38398 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
BRCA1P38398 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC21.35■■□□□ 1.01
BRCA1P38398 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC21.35■■□□□ 1.01
BRCA1P38398 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC21.35■■□□□ 1.01
BRCA1P38398 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
BRCA1P38398 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC21.35■■□□□ 1.01
BRCA1P38398 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC21.35■■□□□ 1.01
BRCA1P38398 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
BRCA1P38398 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC21.35■■□□□ 1.01
BRCA1P38398 MIR6080-201ENST00000617359 66 ntBASIC21.35■■□□□ 1.01
BRCA1P38398 AL358472.5-202ENST00000641448 1267 ntBASIC21.35■■□□□ 1.01
BRCA1P38398 AC084121.4-201ENST00000641598 221 ntBASIC21.35■■□□□ 1.01
BRCA1P38398 AF228730.8-201ENST00000642140 221 ntBASIC21.35■■□□□ 1.01
BRCA1P38398 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
BRCA1P38398 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
BRCA1P38398 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
BRCA1P38398 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
BRCA1P38398 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
BRCA1P38398 ADM-207ENST00000530439 1839 ntTSL 2 BASIC21.34■■□□□ 1.01
BRCA1P38398 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC21.34■■□□□ 1.01
BRCA1P38398 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
BRCA1P38398 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
BRCA1P38398 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
BRCA1P38398 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC21.34■■□□□ 1.01
BRCA1P38398 TSSK5P-201ENST00000423978 907 ntBASIC21.34■■□□□ 1.01
BRCA1P38398 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC21.34■■□□□ 1.01
BRCA1P38398 RBPMS2P1-201ENST00000437762 623 ntBASIC21.34■■□□□ 1.01
BRCA1P38398 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC21.34■■□□□ 1.01
BRCA1P38398 AC097493.3-201ENST00000509725 367 ntBASIC21.34■■□□□ 1.01
BRCA1P38398 DUTP2-201ENST00000519164 463 ntBASIC21.34■■□□□ 1.01
BRCA1P38398 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC21.34■■□□□ 1.01
BRCA1P38398 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
BRCA1P38398 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC21.34■■□□□ 1.01
BRCA1P38398 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
BRCA1P38398 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
BRCA1P38398 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
BRCA1P38398 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC21.33■■□□□ 1.01
BRCA1P38398 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
BRCA1P38398 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC21.33■■□□□ 1.01
BRCA1P38398 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC21.33■■□□□ 1.01
BRCA1P38398 IGHV3-71-201ENST00000523324 359 ntBASIC21.33■■□□□ 1.01
BRCA1P38398 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC21.33■■□□□ 1.01
BRCA1P38398 AC026150.2-201ENST00000564693 1156 ntBASIC21.33■■□□□ 1.01
BRCA1P38398 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC21.33■■□□□ 1.01
BRCA1P38398 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC21.33■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms