Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SCN4AP35499 AC004890.2-204ENST00000481968 304 ntBASIC20.77■□□□□ 0.92
SCN4AP35499 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC20.77■□□□□ 0.92
SCN4AP35499 SERBP1P5-201ENST00000510079 1181 ntBASIC20.77■□□□□ 0.92
SCN4AP35499 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC20.77■□□□□ 0.92
SCN4AP35499 TMED1-207ENST00000591695 809 ntTSL 5 BASIC20.77■□□□□ 0.92
SCN4AP35499 AL606495.2-201ENST00000605867 535 ntBASIC20.77■□□□□ 0.92
SCN4AP35499 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC20.77■□□□□ 0.92
SCN4AP35499 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.77■□□□□ 0.92
SCN4AP35499 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC20.77■□□□□ 0.92
SCN4AP35499 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
SCN4AP35499 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
SCN4AP35499 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SCN4AP35499 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SCN4AP35499 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SCN4AP35499 AC097493.3-201ENST00000509725 367 ntBASIC20.76■□□□□ 0.91
SCN4AP35499 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SCN4AP35499 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.76■□□□□ 0.91
SCN4AP35499 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SCN4AP35499 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SCN4AP35499 CALY-202ENST00000368555 783 ntTSL 2 BASIC20.76■□□□□ 0.91
SCN4AP35499 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
SCN4AP35499 AL671277.1-201ENST00000429656 993 ntBASIC20.76■□□□□ 0.91
SCN4AP35499 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SCN4AP35499 RAB34-224ENST00000636513 888 ntTSL 5 BASIC20.76■□□□□ 0.91
SCN4AP35499 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SCN4AP35499 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.75■□□□□ 0.91
SCN4AP35499 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SCN4AP35499 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SCN4AP35499 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC20.75■□□□□ 0.91
SCN4AP35499 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.75■□□□□ 0.91
SCN4AP35499 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SCN4AP35499 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC20.75■□□□□ 0.91
SCN4AP35499 IGHV3-52-201ENST00000519770 353 ntBASIC20.75■□□□□ 0.91
SCN4AP35499 IGHV3-71-201ENST00000523324 359 ntBASIC20.75■□□□□ 0.91
SCN4AP35499 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC20.75■□□□□ 0.91
SCN4AP35499 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
SCN4AP35499 AC010336.2-201ENST00000564226 506 ntBASIC20.75■□□□□ 0.91
SCN4AP35499 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SCN4AP35499 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC20.75■□□□□ 0.91
SCN4AP35499 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
SCN4AP35499 AC093484.2-201ENST00000580996 2166 ntBASIC20.75■□□□□ 0.91
SCN4AP35499 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SCN4AP35499 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC20.75■□□□□ 0.91
SCN4AP35499 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
SCN4AP35499 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SCN4AP35499 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
SCN4AP35499 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC20.74■□□□□ 0.91
SCN4AP35499 DUTP2-201ENST00000519164 463 ntBASIC20.74■□□□□ 0.91
SCN4AP35499 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC20.74■□□□□ 0.91
SCN4AP35499 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
SCN4AP35499 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC20.74■□□□□ 0.91
SCN4AP35499 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SCN4AP35499 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
SCN4AP35499 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SCN4AP35499 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC20.74■□□□□ 0.91
SCN4AP35499 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SCN4AP35499 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC20.74■□□□□ 0.91
SCN4AP35499 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SCN4AP35499 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC20.74■□□□□ 0.91
SCN4AP35499 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SCN4AP35499 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SCN4AP35499 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC20.74■□□□□ 0.91
SCN4AP35499 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
SCN4AP35499 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
SCN4AP35499 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SCN4AP35499 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC20.74■□□□□ 0.91
SCN4AP35499 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SCN4AP35499 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SCN4AP35499 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SCN4AP35499 PIN1P1-201ENST00000412108 996 ntBASIC20.74■□□□□ 0.91
SCN4AP35499 AC026150.2-201ENST00000564693 1156 ntBASIC20.74■□□□□ 0.91
SCN4AP35499 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
SCN4AP35499 MIR6080-201ENST00000617359 66 ntBASIC20.74■□□□□ 0.91
SCN4AP35499 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SCN4AP35499 AC084121.4-201ENST00000641598 221 ntBASIC20.74■□□□□ 0.91
SCN4AP35499 AF228730.8-201ENST00000642140 221 ntBASIC20.74■□□□□ 0.91
SCN4AP35499 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
SCN4AP35499 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SCN4AP35499 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.73■□□□□ 0.91
SCN4AP35499 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SCN4AP35499 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC20.73■□□□□ 0.91
SCN4AP35499 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC20.73■□□□□ 0.91
SCN4AP35499 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC20.73■□□□□ 0.91
SCN4AP35499 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SCN4AP35499 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
SCN4AP35499 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SCN4AP35499 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SCN4AP35499 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
SCN4AP35499 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC20.73■□□□□ 0.91
SCN4AP35499 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
SCN4AP35499 CD81-202ENST00000381036 880 ntTSL 3 BASIC20.73■□□□□ 0.91
SCN4AP35499 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SCN4AP35499 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC20.73■□□□□ 0.91
SCN4AP35499 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC20.73■□□□□ 0.91
SCN4AP35499 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC20.73■□□□□ 0.91
SCN4AP35499 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
SCN4AP35499 CU639417.3-201ENST00000624240 1404 ntBASIC20.73■□□□□ 0.91
SCN4AP35499 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC20.73■□□□□ 0.91
SCN4AP35499 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms