Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL4A5P29400 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL4A5P29400 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL4A5P29400 PMS2P4-201ENST00000412466 1052 ntBASIC21.09■□□□□ 0.97
COL4A5P29400 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC21.09■□□□□ 0.97
COL4A5P29400 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC21.09■□□□□ 0.97
COL4A5P29400 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COL4A5P29400 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC21.09■□□□□ 0.97
COL4A5P29400 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC21.09■□□□□ 0.97
COL4A5P29400 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC21.09■□□□□ 0.97
COL4A5P29400 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
COL4A5P29400 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COL4A5P29400 AC073592.3-201ENST00000625118 1834 ntBASIC21.09■□□□□ 0.97
COL4A5P29400 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL4A5P29400 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC21.09■□□□□ 0.97
COL4A5P29400 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COL4A5P29400 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL4A5P29400 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COL4A5P29400 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC21.09■□□□□ 0.97
COL4A5P29400 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC21.09■□□□□ 0.97
COL4A5P29400 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COL4A5P29400 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC21.09■□□□□ 0.97
COL4A5P29400 FAM58DP-201ENST00000428076 619 ntBASIC21.09■□□□□ 0.97
COL4A5P29400 AL513480.1-201ENST00000451731 511 ntBASIC21.09■□□□□ 0.97
COL4A5P29400 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
COL4A5P29400 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
COL4A5P29400 NAA60-208ENST00000570819 833 ntTSL 2 BASIC21.09■□□□□ 0.97
COL4A5P29400 YTHDF3-AS1-201ENST00000603538 718 ntBASIC21.09■□□□□ 0.97
COL4A5P29400 AC012645.4-201ENST00000610691 1061 ntBASIC21.09■□□□□ 0.97
COL4A5P29400 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC21.08■□□□□ 0.97
COL4A5P29400 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC21.08■□□□□ 0.97
COL4A5P29400 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL4A5P29400 BX276092.7-203ENST00000637198 1536 ntBASIC21.08■□□□□ 0.97
COL4A5P29400 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC21.08■□□□□ 0.97
COL4A5P29400 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL4A5P29400 EFTUD1P1-204ENST00000560401 1798 ntBASIC21.08■□□□□ 0.97
COL4A5P29400 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
COL4A5P29400 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC21.08■□□□□ 0.97
COL4A5P29400 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
COL4A5P29400 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
COL4A5P29400 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
COL4A5P29400 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC21.08■□□□□ 0.96
COL4A5P29400 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
COL4A5P29400 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
COL4A5P29400 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
COL4A5P29400 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
COL4A5P29400 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
COL4A5P29400 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
COL4A5P29400 AC002472.2-201ENST00000442739 958 ntBASIC21.08■□□□□ 0.96
COL4A5P29400 FAM185BP-201ENST00000443595 716 ntBASIC21.08■□□□□ 0.96
COL4A5P29400 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC21.08■□□□□ 0.96
COL4A5P29400 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC21.08■□□□□ 0.96
COL4A5P29400 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
COL4A5P29400 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
COL4A5P29400 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC21.08■□□□□ 0.96
COL4A5P29400 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL4A5P29400 BSG-215ENST00000618006 1329 ntTSL 2 BASIC21.07■□□□□ 0.96
COL4A5P29400 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
COL4A5P29400 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL4A5P29400 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
COL4A5P29400 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL4A5P29400 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL4A5P29400 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL4A5P29400 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL4A5P29400 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL4A5P29400 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL4A5P29400 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC21.07■□□□□ 0.96
COL4A5P29400 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC21.07■□□□□ 0.96
COL4A5P29400 DDX43P3-201ENST00000441064 443 ntBASIC21.07■□□□□ 0.96
COL4A5P29400 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
COL4A5P29400 AC087163.2-201ENST00000457299 853 ntBASIC21.07■□□□□ 0.96
COL4A5P29400 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC21.07■□□□□ 0.96
COL4A5P29400 AC112191.1-201ENST00000523689 701 ntBASIC21.07■□□□□ 0.96
COL4A5P29400 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC21.07■□□□□ 0.96
COL4A5P29400 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC21.07■□□□□ 0.96
COL4A5P29400 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC21.07■□□□□ 0.96
COL4A5P29400 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC21.07■□□□□ 0.96
COL4A5P29400 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
COL4A5P29400 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL4A5P29400 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL4A5P29400 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
COL4A5P29400 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
COL4A5P29400 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
COL4A5P29400 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL4A5P29400 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
COL4A5P29400 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC21.07■□□□□ 0.96
COL4A5P29400 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL4A5P29400 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
COL4A5P29400 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL4A5P29400 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL4A5P29400 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
COL4A5P29400 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC21.06■□□□□ 0.96
COL4A5P29400 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL4A5P29400 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC21.06■□□□□ 0.96
COL4A5P29400 AC005034.1-201ENST00000426657 489 ntBASIC21.06■□□□□ 0.96
COL4A5P29400 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC21.06■□□□□ 0.96
COL4A5P29400 AC087641.1-201ENST00000557561 1021 ntBASIC21.06■□□□□ 0.96
COL4A5P29400 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC21.06■□□□□ 0.96
COL4A5P29400 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
COL4A5P29400 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms