Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC17.68■□□□□ 0.42
MSH3P20585 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC17.68■□□□□ 0.42
MSH3P20585 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MSH3P20585 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
MSH3P20585 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
MSH3P20585 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
MSH3P20585 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
MSH3P20585 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MSH3P20585 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MSH3P20585 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.68■□□□□ 0.42
MSH3P20585 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
MSH3P20585 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
MSH3P20585 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
MSH3P20585 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC17.68■□□□□ 0.42
MSH3P20585 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC17.68■□□□□ 0.42
MSH3P20585 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
MSH3P20585 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MSH3P20585 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MSH3P20585 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
MSH3P20585 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
MSH3P20585 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
MSH3P20585 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
MSH3P20585 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MSH3P20585 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MSH3P20585 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
MSH3P20585 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.67■□□□□ 0.42
MSH3P20585 AC134043.2-201ENST00000624206 2238 ntBASIC17.67■□□□□ 0.42
MSH3P20585 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.67■□□□□ 0.42
MSH3P20585 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
MSH3P20585 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
MSH3P20585 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
MSH3P20585 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
MSH3P20585 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
MSH3P20585 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
MSH3P20585 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MSH3P20585 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MSH3P20585 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
MSH3P20585 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MSH3P20585 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC17.67■□□□□ 0.42
MSH3P20585 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
MSH3P20585 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC17.67■□□□□ 0.42
MSH3P20585 MPI-205ENST00000562606 1052 ntTSL 3 BASIC17.67■□□□□ 0.42
MSH3P20585 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC17.67■□□□□ 0.42
MSH3P20585 AL353801.3-201ENST00000609898 542 ntBASIC17.67■□□□□ 0.42
MSH3P20585 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC17.67■□□□□ 0.42
MSH3P20585 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC17.67■□□□□ 0.42
MSH3P20585 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
MSH3P20585 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
MSH3P20585 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
MSH3P20585 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.67■□□□□ 0.42
MSH3P20585 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.67■□□□□ 0.42
MSH3P20585 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
MSH3P20585 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
MSH3P20585 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.67■□□□□ 0.42
MSH3P20585 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
MSH3P20585 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
MSH3P20585 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.66■□□□□ 0.42
MSH3P20585 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
MSH3P20585 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
MSH3P20585 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
MSH3P20585 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
MSH3P20585 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
MSH3P20585 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.66■□□□□ 0.42
MSH3P20585 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
MSH3P20585 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
MSH3P20585 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
MSH3P20585 AC104819.1-201ENST00000504587 486 ntBASIC17.66■□□□□ 0.42
MSH3P20585 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC17.66■□□□□ 0.42
MSH3P20585 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
MSH3P20585 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC17.66■□□□□ 0.42
MSH3P20585 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
MSH3P20585 METTL23-204ENST00000586752 904 ntTSL 2 BASIC17.66■□□□□ 0.42
MSH3P20585 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC17.66■□□□□ 0.42
MSH3P20585 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
MSH3P20585 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.66■□□□□ 0.42
MSH3P20585 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
MSH3P20585 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
MSH3P20585 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
MSH3P20585 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.66■□□□□ 0.42
MSH3P20585 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
MSH3P20585 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
MSH3P20585 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
MSH3P20585 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
MSH3P20585 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
MSH3P20585 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
MSH3P20585 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.65■□□□□ 0.42
MSH3P20585 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
MSH3P20585 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
MSH3P20585 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
MSH3P20585 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.65■□□□□ 0.42
MSH3P20585 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
MSH3P20585 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.65■□□□□ 0.42
MSH3P20585 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC17.65■□□□□ 0.42
MSH3P20585 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
MSH3P20585 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
MSH3P20585 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
MSH3P20585 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
MSH3P20585 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
MSH3P20585 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
MSH3P20585 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms