Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC18.65■□□□□ 0.58
RB1P06400 BCRP1-201ENST00000444246 691 ntBASIC18.65■□□□□ 0.58
RB1P06400 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC18.65■□□□□ 0.58
RB1P06400 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC18.65■□□□□ 0.58
RB1P06400 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC18.65■□□□□ 0.58
RB1P06400 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
RB1P06400 AC092902.6-201ENST00000641783 218 ntBASIC18.65■□□□□ 0.58
RB1P06400 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.65■□□□□ 0.58
RB1P06400 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RB1P06400 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC18.65■□□□□ 0.58
RB1P06400 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
RB1P06400 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RB1P06400 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
RB1P06400 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC18.65■□□□□ 0.58
RB1P06400 GOLGA6L17P-202ENST00000614358 1398 ntBASIC18.65■□□□□ 0.58
RB1P06400 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RB1P06400 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.65■□□□□ 0.58
RB1P06400 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC18.65■□□□□ 0.58
RB1P06400 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC18.65■□□□□ 0.58
RB1P06400 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
RB1P06400 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC18.65■□□□□ 0.58
RB1P06400 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC18.64■□□□□ 0.58
RB1P06400 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
RB1P06400 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC18.64■□□□□ 0.58
RB1P06400 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
RB1P06400 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
RB1P06400 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.64■□□□□ 0.57
RB1P06400 PC-208ENST00000529047 1607 ntTSL 3 BASIC18.64■□□□□ 0.57
RB1P06400 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RB1P06400 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
RB1P06400 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
RB1P06400 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RB1P06400 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RB1P06400 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC18.64■□□□□ 0.57
RB1P06400 AC004461.1-201ENST00000412461 403 ntBASIC18.64■□□□□ 0.57
RB1P06400 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC18.64■□□□□ 0.57
RB1P06400 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC18.64■□□□□ 0.57
RB1P06400 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC18.64■□□□□ 0.57
RB1P06400 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC18.64■□□□□ 0.57
RB1P06400 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC18.64■□□□□ 0.57
RB1P06400 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC18.64■□□□□ 0.57
RB1P06400 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC18.64■□□□□ 0.57
RB1P06400 REXO1L3P-201ENST00000622202 1288 ntBASIC18.64■□□□□ 0.57
RB1P06400 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
RB1P06400 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RB1P06400 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC18.64■□□□□ 0.57
RB1P06400 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
RB1P06400 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.64■□□□□ 0.57
RB1P06400 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC18.64■□□□□ 0.57
RB1P06400 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
RB1P06400 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RB1P06400 AL121761.2-201ENST00000598007 1648 ntBASIC18.63■□□□□ 0.57
RB1P06400 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
RB1P06400 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RB1P06400 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.63■□□□□ 0.57
RB1P06400 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
RB1P06400 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RB1P06400 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RB1P06400 LINC00982-205ENST00000420957 435 ntBASIC18.63■□□□□ 0.57
RB1P06400 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC18.63■□□□□ 0.57
RB1P06400 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RB1P06400 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC18.63■□□□□ 0.57
RB1P06400 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
RB1P06400 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC18.63■□□□□ 0.57
RB1P06400 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC18.63■□□□□ 0.57
RB1P06400 AC239800.4-201ENST00000603712 296 ntBASIC18.63■□□□□ 0.57
RB1P06400 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC18.63■□□□□ 0.57
RB1P06400 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC18.63■□□□□ 0.57
RB1P06400 AC138932.1-201ENST00000534164 6830 ntBASIC18.63■□□□□ 0.57
RB1P06400 BX276092.7-203ENST00000637198 1536 ntBASIC18.63■□□□□ 0.57
RB1P06400 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC18.63■□□□□ 0.57
RB1P06400 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RB1P06400 AC009336.1-201ENST00000608941 1553 ntBASIC18.63■□□□□ 0.57
RB1P06400 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RB1P06400 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RB1P06400 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RB1P06400 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
RB1P06400 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
RB1P06400 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
RB1P06400 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
RB1P06400 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC18.62■□□□□ 0.57
RB1P06400 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RB1P06400 CD99-202ENST00000381180 530 ntTSL 2 BASIC18.62■□□□□ 0.57
RB1P06400 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RB1P06400 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC18.62■□□□□ 0.57
RB1P06400 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RB1P06400 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC18.62■□□□□ 0.57
RB1P06400 CXCL1P1-201ENST00000502804 216 ntBASIC18.62■□□□□ 0.57
RB1P06400 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RB1P06400 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC18.62■□□□□ 0.57
RB1P06400 AC068137.2-201ENST00000605408 478 ntBASIC18.62■□□□□ 0.57
RB1P06400 AC093512.1-201ENST00000617969 520 ntBASIC18.62■□□□□ 0.57
RB1P06400 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RB1P06400 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RB1P06400 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RB1P06400 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RB1P06400 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RB1P06400 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC18.62■□□□□ 0.57
RB1P06400 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC18.62■□□□□ 0.57
RB1P06400 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms