Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC18.68■□□□□ 0.58
RTN3O95197 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
RTN3O95197 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
RTN3O95197 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RTN3O95197 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RTN3O95197 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
RTN3O95197 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
RTN3O95197 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
RTN3O95197 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RTN3O95197 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RTN3O95197 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RTN3O95197 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RTN3O95197 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RTN3O95197 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RTN3O95197 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC18.67■□□□□ 0.58
RTN3O95197 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RTN3O95197 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RTN3O95197 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC18.67■□□□□ 0.58
RTN3O95197 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
RTN3O95197 MED29-202ENST00000594368 1471 ntTSL 2 BASIC18.67■□□□□ 0.58
RTN3O95197 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RTN3O95197 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RTN3O95197 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RTN3O95197 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC18.67■□□□□ 0.58
RTN3O95197 ABCD1P5-201ENST00000445663 754 ntBASIC18.67■□□□□ 0.58
RTN3O95197 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC18.67■□□□□ 0.58
RTN3O95197 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC18.67■□□□□ 0.58
RTN3O95197 AC106795.1-205ENST00000512851 1056 ntBASIC18.67■□□□□ 0.58
RTN3O95197 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
RTN3O95197 AC008608.2-201ENST00000606089 416 ntBASIC18.67■□□□□ 0.58
RTN3O95197 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC18.67■□□□□ 0.58
RTN3O95197 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RTN3O95197 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RTN3O95197 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC18.67■□□□□ 0.58
RTN3O95197 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RTN3O95197 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RTN3O95197 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC18.67■□□□□ 0.58
RTN3O95197 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RTN3O95197 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RTN3O95197 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RTN3O95197 AC009113.1-201ENST00000570267 2443 ntBASIC18.66■□□□□ 0.58
RTN3O95197 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC18.66■□□□□ 0.58
RTN3O95197 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
RTN3O95197 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC18.66■□□□□ 0.58
RTN3O95197 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.66■□□□□ 0.58
RTN3O95197 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
RTN3O95197 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RTN3O95197 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RTN3O95197 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC18.66■□□□□ 0.58
RTN3O95197 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RTN3O95197 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC18.66■□□□□ 0.58
RTN3O95197 FLJ13224-201ENST00000313737 1514 ntBASIC18.66■□□□□ 0.58
RTN3O95197 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RTN3O95197 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RTN3O95197 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RTN3O95197 SRP19-202ENST00000445150 833 ntTSL 2 BASIC18.66■□□□□ 0.58
RTN3O95197 RBSN-204ENST00000449050 903 ntTSL 2 BASIC18.66■□□□□ 0.58
RTN3O95197 AP002469.2-201ENST00000531724 424 ntBASIC18.66■□□□□ 0.58
RTN3O95197 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC18.66■□□□□ 0.58
RTN3O95197 CALM3-211ENST00000598871 561 ntTSL 4 BASIC18.66■□□□□ 0.58
RTN3O95197 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC18.66■□□□□ 0.58
RTN3O95197 AL355877.3-201ENST00000622820 899 ntBASIC18.66■□□□□ 0.58
RTN3O95197 VPS51-217ENST00000639871 243 ntTSL 5 BASIC18.66■□□□□ 0.58
RTN3O95197 AC010460.3-201ENST00000511359 1579 ntBASIC18.66■□□□□ 0.58
RTN3O95197 AC020763.4-201ENST00000623414 4170 ntBASIC18.66■□□□□ 0.58
RTN3O95197 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
RTN3O95197 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC18.66■□□□□ 0.58
RTN3O95197 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
RTN3O95197 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
RTN3O95197 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
RTN3O95197 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RTN3O95197 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC18.66■□□□□ 0.58
RTN3O95197 AC141586.5-201ENST00000624546 2050 ntBASIC18.65■□□□□ 0.58
RTN3O95197 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RTN3O95197 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC18.65■□□□□ 0.58
RTN3O95197 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RTN3O95197 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RTN3O95197 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
RTN3O95197 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
RTN3O95197 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC18.65■□□□□ 0.58
RTN3O95197 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RTN3O95197 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RTN3O95197 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
RTN3O95197 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.65■□□□□ 0.58
RTN3O95197 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RTN3O95197 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC18.65■□□□□ 0.58
RTN3O95197 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC18.65■□□□□ 0.58
RTN3O95197 FDX1P1-201ENST00000449115 551 ntBASIC18.65■□□□□ 0.58
RTN3O95197 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC18.65■□□□□ 0.58
RTN3O95197 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC18.65■□□□□ 0.58
RTN3O95197 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC18.65■□□□□ 0.58
RTN3O95197 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RTN3O95197 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC18.65■□□□□ 0.58
RTN3O95197 COX5A-202ENST00000562233 441 ntTSL 3 BASIC18.65■□□□□ 0.58
RTN3O95197 AP001269.4-201ENST00000609611 512 ntBASIC18.65■□□□□ 0.58
RTN3O95197 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC18.65■□□□□ 0.58
RTN3O95197 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC18.65■□□□□ 0.58
RTN3O95197 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.65■□□□□ 0.58
RTN3O95197 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RTN3O95197 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms