Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HMGB3O15347 POU2F2-202ENST00000389341 6901 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
HMGB3O15347 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HMGB3O15347 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HMGB3O15347 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
HMGB3O15347 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HMGB3O15347 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC14.3□□□□□ -0.12
HMGB3O15347 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC14.3□□□□□ -0.12
HMGB3O15347 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HMGB3O15347 SOX15-203ENST00000570788 1093 ntBASIC14.3□□□□□ -0.12
HMGB3O15347 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC14.3□□□□□ -0.12
HMGB3O15347 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
HMGB3O15347 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HMGB3O15347 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC14.3□□□□□ -0.12
HMGB3O15347 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HMGB3O15347 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HMGB3O15347 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
HMGB3O15347 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HMGB3O15347 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC14.3□□□□□ -0.12
HMGB3O15347 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HMGB3O15347 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
HMGB3O15347 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
HMGB3O15347 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC14.3□□□□□ -0.12
HMGB3O15347 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC14.3□□□□□ -0.12
HMGB3O15347 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
HMGB3O15347 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
HMGB3O15347 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
HMGB3O15347 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HMGB3O15347 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC14.29□□□□□ -0.12
HMGB3O15347 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HMGB3O15347 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
HMGB3O15347 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
HMGB3O15347 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC14.29□□□□□ -0.12
HMGB3O15347 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HMGB3O15347 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HMGB3O15347 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
HMGB3O15347 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC14.29□□□□□ -0.12
HMGB3O15347 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HMGB3O15347 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HMGB3O15347 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC14.29□□□□□ -0.12
HMGB3O15347 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HMGB3O15347 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HMGB3O15347 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HMGB3O15347 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HMGB3O15347 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC14.29□□□□□ -0.12
HMGB3O15347 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
HMGB3O15347 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC14.29□□□□□ -0.12
HMGB3O15347 F2R-202ENST00000505600 442 ntTSL 2 BASIC14.29□□□□□ -0.12
HMGB3O15347 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC14.29□□□□□ -0.12
HMGB3O15347 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HMGB3O15347 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HMGB3O15347 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC14.29□□□□□ -0.12
HMGB3O15347 AC008687.6-201ENST00000596318 630 ntBASIC14.29□□□□□ -0.12
HMGB3O15347 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HMGB3O15347 Six3os1_6.1-201ENST00000620790 196 ntBASIC14.29□□□□□ -0.12
HMGB3O15347 HLA-B-256ENST00000639848 1089 ntBASIC14.29□□□□□ -0.12
HMGB3O15347 AC067750.1-201ENST00000608826 6545 ntBASIC14.29□□□□□ -0.12
HMGB3O15347 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC14.29□□□□□ -0.12
HMGB3O15347 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HMGB3O15347 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
HMGB3O15347 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HMGB3O15347 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
HMGB3O15347 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
HMGB3O15347 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
HMGB3O15347 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HMGB3O15347 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HMGB3O15347 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HMGB3O15347 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HMGB3O15347 SP100-208ENST00000427101 1922 ntTSL 2 BASIC14.29□□□□□ -0.12
HMGB3O15347 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
HMGB3O15347 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HMGB3O15347 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
HMGB3O15347 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC14.29□□□□□ -0.12
HMGB3O15347 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HMGB3O15347 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HMGB3O15347 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC14.29□□□□□ -0.12
HMGB3O15347 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HMGB3O15347 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
HMGB3O15347 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
HMGB3O15347 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HMGB3O15347 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HMGB3O15347 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
HMGB3O15347 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HMGB3O15347 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
HMGB3O15347 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC14.28□□□□□ -0.12
HMGB3O15347 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HMGB3O15347 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
HMGB3O15347 MIR663A-201ENST00000385250 93 ntBASIC14.28□□□□□ -0.12
HMGB3O15347 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
HMGB3O15347 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
HMGB3O15347 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC14.28□□□□□ -0.12
HMGB3O15347 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
HMGB3O15347 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC14.28□□□□□ -0.12
HMGB3O15347 Z85996.1-201ENST00000494644 937 ntBASIC14.28□□□□□ -0.12
HMGB3O15347 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC14.28□□□□□ -0.12
HMGB3O15347 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC14.28□□□□□ -0.12
HMGB3O15347 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC14.28□□□□□ -0.12
HMGB3O15347 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC14.28□□□□□ -0.12
HMGB3O15347 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HMGB3O15347 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC14.28□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms