Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CACNA1AO00555 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
CACNA1AO00555 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CACNA1AO00555 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC16.5■□□□□ 0.23
CACNA1AO00555 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC16.5■□□□□ 0.23
CACNA1AO00555 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC16.5■□□□□ 0.23
CACNA1AO00555 AL355994.2-201ENST00000447882 704 ntBASIC16.5■□□□□ 0.23
CACNA1AO00555 AP000842.3-202ENST00000569238 1080 ntBASIC16.5■□□□□ 0.23
CACNA1AO00555 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC16.5■□□□□ 0.23
CACNA1AO00555 U62317.3-201ENST00000608319 855 ntBASIC16.5■□□□□ 0.23
CACNA1AO00555 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
CACNA1AO00555 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CACNA1AO00555 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC16.5■□□□□ 0.23
CACNA1AO00555 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CACNA1AO00555 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CACNA1AO00555 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
CACNA1AO00555 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CACNA1AO00555 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CACNA1AO00555 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
CACNA1AO00555 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CACNA1AO00555 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC16.5■□□□□ 0.23
CACNA1AO00555 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC16.5■□□□□ 0.23
CACNA1AO00555 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CACNA1AO00555 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC16.5■□□□□ 0.23
CACNA1AO00555 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC16.5■□□□□ 0.23
CACNA1AO00555 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC16.5■□□□□ 0.23
CACNA1AO00555 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
CACNA1AO00555 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CACNA1AO00555 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
CACNA1AO00555 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CACNA1AO00555 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CACNA1AO00555 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.49■□□□□ 0.23
CACNA1AO00555 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CACNA1AO00555 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
CACNA1AO00555 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CACNA1AO00555 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CACNA1AO00555 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC16.49■□□□□ 0.23
CACNA1AO00555 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC16.49■□□□□ 0.23
CACNA1AO00555 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
CACNA1AO00555 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
CACNA1AO00555 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CACNA1AO00555 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CACNA1AO00555 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CACNA1AO00555 AC132938.6-201ENST00000623828 1655 ntBASIC16.49■□□□□ 0.23
CACNA1AO00555 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC16.49■□□□□ 0.23
CACNA1AO00555 AC018445.3-201ENST00000624177 1945 ntBASIC16.49■□□□□ 0.23
CACNA1AO00555 AC020907.5-201ENST00000624372 1936 ntBASIC16.49■□□□□ 0.23
CACNA1AO00555 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CACNA1AO00555 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CACNA1AO00555 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC16.49■□□□□ 0.23
CACNA1AO00555 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CACNA1AO00555 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CACNA1AO00555 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
CACNA1AO00555 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CACNA1AO00555 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
CACNA1AO00555 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
CACNA1AO00555 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CACNA1AO00555 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CACNA1AO00555 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC16.49■□□□□ 0.23
CACNA1AO00555 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC16.49■□□□□ 0.23
CACNA1AO00555 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CACNA1AO00555 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CACNA1AO00555 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CACNA1AO00555 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CACNA1AO00555 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CACNA1AO00555 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CACNA1AO00555 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
CACNA1AO00555 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
CACNA1AO00555 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
CACNA1AO00555 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CACNA1AO00555 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CACNA1AO00555 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC16.48■□□□□ 0.23
CACNA1AO00555 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CACNA1AO00555 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC16.48■□□□□ 0.23
CACNA1AO00555 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CACNA1AO00555 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
CACNA1AO00555 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC16.48■□□□□ 0.23
CACNA1AO00555 TUBB1P2-201ENST00000422712 1306 ntBASIC16.48■□□□□ 0.23
CACNA1AO00555 TUBB1P1-201ENST00000503144 1300 ntBASIC16.48■□□□□ 0.23
CACNA1AO00555 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
CACNA1AO00555 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC16.48■□□□□ 0.23
CACNA1AO00555 AC234783.1-201ENST00000441761 496 ntBASIC16.48■□□□□ 0.23
CACNA1AO00555 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC16.48■□□□□ 0.23
CACNA1AO00555 AL583810.1-201ENST00000553344 1045 ntBASIC16.48■□□□□ 0.23
CACNA1AO00555 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC16.48■□□□□ 0.23
CACNA1AO00555 MIR4453-201ENST00000584019 89 ntBASIC16.48■□□□□ 0.23
CACNA1AO00555 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CACNA1AO00555 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CACNA1AO00555 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
CACNA1AO00555 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CACNA1AO00555 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CACNA1AO00555 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CACNA1AO00555 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CACNA1AO00555 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC16.47■□□□□ 0.23
CACNA1AO00555 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CACNA1AO00555 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
CACNA1AO00555 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC16.47■□□□□ 0.23
CACNA1AO00555 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CACNA1AO00555 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC16.47■□□□□ 0.23
CACNA1AO00555 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms