Protein–RNA interactions for Protein: E9PGA6

C1QTNF3-AMACR, C1QTNF3-AMACR readthrough (NMD candidate), humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C1QTNF3-AMACRE9PGA6 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC17.74■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 AC003669.1-201ENST00000334569 611 ntBASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 KLF4P1-201ENST00000412782 1185 ntBASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 AL020989.1-201ENST00000422979 469 ntBASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 IGHV3-52-201ENST00000519770 353 ntBASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 AC107918.4-202ENST00000641623 219 ntBASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 OR6D1P-202ENST00000641007 5290 ntBASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC17.72■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC17.72■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 AL049757.1-201ENST00000616842 1596 ntBASIC17.72■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC17.72■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC17.72■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC17.72■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 AC109462.3-201ENST00000573934 613 ntBASIC17.72■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 NME4-212ENST00000621774 904 ntTSL 3 BASIC17.72■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 AC008735.5-201ENST00000623544 497 ntBASIC17.72■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 AC116407.3-201ENST00000623905 1129 ntBASIC17.72■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC17.72■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.72■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 AC009113.1-201ENST00000570267 2443 ntBASIC17.72■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC17.72■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC17.72■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC17.71■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.71■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.71■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.71■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.71■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.71■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
C1QTNF3-AMACRE9PGA6 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms