Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A5A8TX70 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A5A8TX70 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC13.61□□□□□ -0.23
COL6A5A8TX70 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
COL6A5A8TX70 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A5A8TX70 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A5A8TX70 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A5A8TX70 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A5A8TX70 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A5A8TX70 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A5A8TX70 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A5A8TX70 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A5A8TX70 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
COL6A5A8TX70 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC13.61□□□□□ -0.23
COL6A5A8TX70 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A5A8TX70 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC13.61□□□□□ -0.23
COL6A5A8TX70 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
COL6A5A8TX70 AL138828.2-201ENST00000615812 383 ntBASIC13.61□□□□□ -0.23
COL6A5A8TX70 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC13.61□□□□□ -0.23
COL6A5A8TX70 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A5A8TX70 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A5A8TX70 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A5A8TX70 TCF3P1-201ENST00000423021 1937 ntBASIC13.61□□□□□ -0.23
COL6A5A8TX70 FUT8-AS1-201ENST00000621019 1521 ntBASIC13.61□□□□□ -0.23
COL6A5A8TX70 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
COL6A5A8TX70 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A5A8TX70 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A5A8TX70 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A5A8TX70 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A5A8TX70 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A5A8TX70 KRT8P44-201ENST00000441609 1350 ntBASIC13.61□□□□□ -0.23
COL6A5A8TX70 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC13.61□□□□□ -0.23
COL6A5A8TX70 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL6A5A8TX70 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC13.6□□□□□ -0.23
COL6A5A8TX70 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC13.6□□□□□ -0.23
COL6A5A8TX70 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
COL6A5A8TX70 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC13.6□□□□□ -0.23
COL6A5A8TX70 RPL28-206ENST00000558752 671 ntTSL 3 BASIC13.6□□□□□ -0.23
COL6A5A8TX70 NAT9-224ENST00000583757 583 ntTSL 3 BASIC13.6□□□□□ -0.23
COL6A5A8TX70 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC13.6□□□□□ -0.23
COL6A5A8TX70 AL590560.3-201ENST00000623350 461 ntBASIC13.6□□□□□ -0.23
COL6A5A8TX70 AL139099.5-201ENST00000635274 300 ntBASIC13.6□□□□□ -0.23
COL6A5A8TX70 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC13.6□□□□□ -0.23
COL6A5A8TX70 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
COL6A5A8TX70 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC13.6□□□□□ -0.23
COL6A5A8TX70 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL6A5A8TX70 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC13.6□□□□□ -0.23
COL6A5A8TX70 SPDYE7P-202ENST00000420373 878 ntBASIC13.6□□□□□ -0.23
COL6A5A8TX70 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL6A5A8TX70 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL6A5A8TX70 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL6A5A8TX70 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL6A5A8TX70 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC13.6□□□□□ -0.23
COL6A5A8TX70 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC13.6□□□□□ -0.23
COL6A5A8TX70 API5-211ENST00000534695 560 ntTSL 5 BASIC13.6□□□□□ -0.23
COL6A5A8TX70 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC13.6□□□□□ -0.23
COL6A5A8TX70 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
COL6A5A8TX70 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
COL6A5A8TX70 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL6A5A8TX70 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC13.6□□□□□ -0.23
COL6A5A8TX70 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL6A5A8TX70 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC13.6□□□□□ -0.23
COL6A5A8TX70 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
COL6A5A8TX70 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC13.6□□□□□ -0.23
COL6A5A8TX70 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC13.6□□□□□ -0.23
COL6A5A8TX70 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL6A5A8TX70 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC13.6□□□□□ -0.23
COL6A5A8TX70 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
COL6A5A8TX70 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL6A5A8TX70 AC140912.1-201ENST00000577171 1054 ntBASIC13.6□□□□□ -0.23
COL6A5A8TX70 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC13.6□□□□□ -0.23
COL6A5A8TX70 PPA1-206ENST00000625364 644 ntTSL 5 BASIC13.6□□□□□ -0.23
COL6A5A8TX70 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
COL6A5A8TX70 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
COL6A5A8TX70 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL6A5A8TX70 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC13.59□□□□□ -0.23
COL6A5A8TX70 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL6A5A8TX70 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC13.59□□□□□ -0.23
COL6A5A8TX70 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC13.59□□□□□ -0.23
COL6A5A8TX70 PALM-208ENST00000592155 2272 ntTSL 4 BASIC13.59□□□□□ -0.23
COL6A5A8TX70 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL6A5A8TX70 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
COL6A5A8TX70 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC13.59□□□□□ -0.23
COL6A5A8TX70 HIST1H2BPS3-201ENST00000419683 341 ntBASIC13.59□□□□□ -0.23
COL6A5A8TX70 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC13.59□□□□□ -0.23
COL6A5A8TX70 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC13.59□□□□□ -0.23
COL6A5A8TX70 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL6A5A8TX70 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL6A5A8TX70 SSH2-211ENST00000590153 570 ntTSL 4 BASIC13.59□□□□□ -0.23
COL6A5A8TX70 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
COL6A5A8TX70 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC13.59□□□□□ -0.23
COL6A5A8TX70 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC13.59□□□□□ -0.23
COL6A5A8TX70 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL6A5A8TX70 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL6A5A8TX70 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
COL6A5A8TX70 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC13.59□□□□□ -0.23
COL6A5A8TX70 AC022210.1-201ENST00000449856 793 ntBASIC13.59□□□□□ -0.23
COL6A5A8TX70 TPI1-206ENST00000488464 791 ntTSL 5 BASIC13.59□□□□□ -0.23
COL6A5A8TX70 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
COL6A5A8TX70 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms