Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USH1CQ9Y6N9 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.72■□□□□ 0.43
USH1CQ9Y6N9 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
USH1CQ9Y6N9 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
USH1CQ9Y6N9 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USH1CQ9Y6N9 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USH1CQ9Y6N9 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC17.72■□□□□ 0.43
USH1CQ9Y6N9 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC17.72■□□□□ 0.43
USH1CQ9Y6N9 B3GAT3P1-201ENST00000471720 806 ntBASIC17.72■□□□□ 0.43
USH1CQ9Y6N9 RNA5SP413-201ENST00000516373 109 ntBASIC17.72■□□□□ 0.43
USH1CQ9Y6N9 MIR6786-201ENST00000616843 113 ntBASIC17.72■□□□□ 0.43
USH1CQ9Y6N9 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
USH1CQ9Y6N9 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USH1CQ9Y6N9 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC17.72■□□□□ 0.43
USH1CQ9Y6N9 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
USH1CQ9Y6N9 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.72■□□□□ 0.43
USH1CQ9Y6N9 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
USH1CQ9Y6N9 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USH1CQ9Y6N9 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.72■□□□□ 0.43
USH1CQ9Y6N9 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USH1CQ9Y6N9 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USH1CQ9Y6N9 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
USH1CQ9Y6N9 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
USH1CQ9Y6N9 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
USH1CQ9Y6N9 LINC00304-203ENST00000565008 1864 ntBASIC17.71■□□□□ 0.43
USH1CQ9Y6N9 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
USH1CQ9Y6N9 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
USH1CQ9Y6N9 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC17.71■□□□□ 0.43
USH1CQ9Y6N9 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
USH1CQ9Y6N9 AC036111.1-201ENST00000533973 1582 ntBASIC17.71■□□□□ 0.43
USH1CQ9Y6N9 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
USH1CQ9Y6N9 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
USH1CQ9Y6N9 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
USH1CQ9Y6N9 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
USH1CQ9Y6N9 ISG20-202ENST00000379224 540 ntTSL 3 BASIC17.71■□□□□ 0.43
USH1CQ9Y6N9 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
USH1CQ9Y6N9 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
USH1CQ9Y6N9 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC17.71■□□□□ 0.43
USH1CQ9Y6N9 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC17.71■□□□□ 0.43
USH1CQ9Y6N9 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC17.71■□□□□ 0.43
USH1CQ9Y6N9 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
USH1CQ9Y6N9 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
USH1CQ9Y6N9 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
USH1CQ9Y6N9 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
USH1CQ9Y6N9 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
USH1CQ9Y6N9 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
USH1CQ9Y6N9 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
USH1CQ9Y6N9 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC17.71■□□□□ 0.43
USH1CQ9Y6N9 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC17.71■□□□□ 0.43
USH1CQ9Y6N9 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
USH1CQ9Y6N9 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
USH1CQ9Y6N9 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
USH1CQ9Y6N9 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
USH1CQ9Y6N9 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.42
USH1CQ9Y6N9 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC17.71■□□□□ 0.42
USH1CQ9Y6N9 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.42
USH1CQ9Y6N9 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
USH1CQ9Y6N9 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
USH1CQ9Y6N9 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
USH1CQ9Y6N9 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.7■□□□□ 0.42
USH1CQ9Y6N9 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
USH1CQ9Y6N9 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
USH1CQ9Y6N9 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC17.7■□□□□ 0.42
USH1CQ9Y6N9 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.7■□□□□ 0.42
USH1CQ9Y6N9 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
USH1CQ9Y6N9 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
USH1CQ9Y6N9 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
USH1CQ9Y6N9 AL353807.1-201ENST00000427475 662 ntBASIC17.7■□□□□ 0.42
USH1CQ9Y6N9 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC17.7■□□□□ 0.42
USH1CQ9Y6N9 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
USH1CQ9Y6N9 KLF13-207ENST00000560473 489 ntTSL 3 BASIC17.7■□□□□ 0.42
USH1CQ9Y6N9 MIR3180-5-201ENST00000583743 153 ntBASIC17.7■□□□□ 0.42
USH1CQ9Y6N9 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC17.7■□□□□ 0.42
USH1CQ9Y6N9 AP000692.2-201ENST00000608391 879 ntBASIC17.7■□□□□ 0.42
USH1CQ9Y6N9 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
USH1CQ9Y6N9 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
USH1CQ9Y6N9 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
USH1CQ9Y6N9 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
USH1CQ9Y6N9 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
USH1CQ9Y6N9 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
USH1CQ9Y6N9 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
USH1CQ9Y6N9 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC17.7■□□□□ 0.42
USH1CQ9Y6N9 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
USH1CQ9Y6N9 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
USH1CQ9Y6N9 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC17.69■□□□□ 0.42
USH1CQ9Y6N9 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
USH1CQ9Y6N9 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
USH1CQ9Y6N9 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.69■□□□□ 0.42
USH1CQ9Y6N9 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USH1CQ9Y6N9 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
USH1CQ9Y6N9 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17.69■□□□□ 0.42
USH1CQ9Y6N9 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC17.69■□□□□ 0.42
USH1CQ9Y6N9 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USH1CQ9Y6N9 HLA-J-201ENST00000462773 1622 ntBASIC17.69■□□□□ 0.42
USH1CQ9Y6N9 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
USH1CQ9Y6N9 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.69■□□□□ 0.42
USH1CQ9Y6N9 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
USH1CQ9Y6N9 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
USH1CQ9Y6N9 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USH1CQ9Y6N9 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms