Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
ZC3H4Q9UPT8 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
ZC3H4Q9UPT8 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
ZC3H4Q9UPT8 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
ZC3H4Q9UPT8 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
ZC3H4Q9UPT8 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
ZC3H4Q9UPT8 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC21.38■■□□□ 1.01
ZC3H4Q9UPT8 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC21.38■■□□□ 1.01
ZC3H4Q9UPT8 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
ZC3H4Q9UPT8 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC21.38■■□□□ 1.01
ZC3H4Q9UPT8 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
ZC3H4Q9UPT8 AC148477.5-201ENST00000625164 1645 ntBASIC21.37■■□□□ 1.01
ZC3H4Q9UPT8 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
ZC3H4Q9UPT8 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC21.37■■□□□ 1.01
ZC3H4Q9UPT8 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
ZC3H4Q9UPT8 ADK-206ENST00000541550 2222 ntTSL 2 BASIC21.37■■□□□ 1.01
ZC3H4Q9UPT8 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
ZC3H4Q9UPT8 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC21.37■■□□□ 1.01
ZC3H4Q9UPT8 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
ZC3H4Q9UPT8 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC21.37■■□□□ 1.01
ZC3H4Q9UPT8 PON3-205ENST00000451904 1053 ntTSL 3 BASIC21.37■■□□□ 1.01
ZC3H4Q9UPT8 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
ZC3H4Q9UPT8 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
ZC3H4Q9UPT8 GATB-205ENST00000508611 605 ntTSL 2 BASIC21.37■■□□□ 1.01
ZC3H4Q9UPT8 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC21.37■■□□□ 1.01
ZC3H4Q9UPT8 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
ZC3H4Q9UPT8 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC21.37■■□□□ 1.01
ZC3H4Q9UPT8 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC21.37■■□□□ 1.01
ZC3H4Q9UPT8 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC21.37■■□□□ 1.01
ZC3H4Q9UPT8 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC21.37■■□□□ 1.01
ZC3H4Q9UPT8 SERF2-217ENST00000630046 862 ntTSL 5 BASIC21.37■■□□□ 1.01
ZC3H4Q9UPT8 HFE2-206ENST00000634927 506 ntTSL 4 BASIC21.37■■□□□ 1.01
ZC3H4Q9UPT8 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
ZC3H4Q9UPT8 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
ZC3H4Q9UPT8 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
ZC3H4Q9UPT8 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
ZC3H4Q9UPT8 TNXA-203ENST00000507684 2038 ntBASIC21.37■■□□□ 1.01
ZC3H4Q9UPT8 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
ZC3H4Q9UPT8 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
ZC3H4Q9UPT8 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
ZC3H4Q9UPT8 AP000974.1-201ENST00000623909 2387 ntBASIC21.37■■□□□ 1.01
ZC3H4Q9UPT8 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
ZC3H4Q9UPT8 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
ZC3H4Q9UPT8 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
ZC3H4Q9UPT8 AC003669.1-201ENST00000334569 611 ntBASIC21.36■■□□□ 1.01
ZC3H4Q9UPT8 MIR661-201ENST00000384842 89 ntBASIC21.36■■□□□ 1.01
ZC3H4Q9UPT8 COX5BP2-201ENST00000392354 334 ntBASIC21.36■■□□□ 1.01
ZC3H4Q9UPT8 MEIS3P1-201ENST00000495167 958 ntBASIC21.36■■□□□ 1.01
ZC3H4Q9UPT8 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC21.36■■□□□ 1.01
ZC3H4Q9UPT8 AC112191.1-201ENST00000523689 701 ntBASIC21.36■■□□□ 1.01
ZC3H4Q9UPT8 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
ZC3H4Q9UPT8 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC21.36■■□□□ 1.01
ZC3H4Q9UPT8 VPS29-207ENST00000549970 818 ntTSL 3 BASIC21.36■■□□□ 1.01
ZC3H4Q9UPT8 AL008721.1-201ENST00000609964 604 ntBASIC21.36■■□□□ 1.01
ZC3H4Q9UPT8 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC21.36■■□□□ 1.01
ZC3H4Q9UPT8 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
ZC3H4Q9UPT8 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
ZC3H4Q9UPT8 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC21.36■■□□□ 1.01
ZC3H4Q9UPT8 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
ZC3H4Q9UPT8 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC21.36■■□□□ 1.01
ZC3H4Q9UPT8 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
ZC3H4Q9UPT8 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC21.36■■□□□ 1.01
ZC3H4Q9UPT8 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
ZC3H4Q9UPT8 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
ZC3H4Q9UPT8 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
ZC3H4Q9UPT8 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC21.36■■□□□ 1.01
ZC3H4Q9UPT8 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
ZC3H4Q9UPT8 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
ZC3H4Q9UPT8 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
ZC3H4Q9UPT8 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
ZC3H4Q9UPT8 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
ZC3H4Q9UPT8 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
ZC3H4Q9UPT8 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
ZC3H4Q9UPT8 KLF4P1-201ENST00000412782 1185 ntBASIC21.35■■□□□ 1.01
ZC3H4Q9UPT8 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC21.35■■□□□ 1.01
ZC3H4Q9UPT8 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC21.35■■□□□ 1.01
ZC3H4Q9UPT8 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC21.35■■□□□ 1.01
ZC3H4Q9UPT8 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
ZC3H4Q9UPT8 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC21.35■■□□□ 1.01
ZC3H4Q9UPT8 IGHV3OR16-6-201ENST00000568775 360 ntBASIC21.35■■□□□ 1.01
ZC3H4Q9UPT8 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
ZC3H4Q9UPT8 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
ZC3H4Q9UPT8 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
ZC3H4Q9UPT8 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC21.35■■□□□ 1.01
ZC3H4Q9UPT8 AC132938.5-201ENST00000624980 1813 ntBASIC21.35■■□□□ 1.01
ZC3H4Q9UPT8 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
ZC3H4Q9UPT8 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
ZC3H4Q9UPT8 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
ZC3H4Q9UPT8 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
ZC3H4Q9UPT8 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
ZC3H4Q9UPT8 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
ZC3H4Q9UPT8 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
ZC3H4Q9UPT8 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC21.35■■□□□ 1.01
ZC3H4Q9UPT8 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC21.35■■□□□ 1.01
ZC3H4Q9UPT8 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
ZC3H4Q9UPT8 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
ZC3H4Q9UPT8 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
ZC3H4Q9UPT8 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
ZC3H4Q9UPT8 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC21.34■■□□□ 1.01
ZC3H4Q9UPT8 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms