Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC33.52■■■□□ 2.96
SHROOM4Q9ULL8 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC33.52■■■□□ 2.96
SHROOM4Q9ULL8 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC33.52■■■□□ 2.96
SHROOM4Q9ULL8 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC33.52■■■□□ 2.96
SHROOM4Q9ULL8 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC33.52■■■□□ 2.96
SHROOM4Q9ULL8 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC33.52■■■□□ 2.96
SHROOM4Q9ULL8 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC33.52■■■□□ 2.96
SHROOM4Q9ULL8 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC33.52■■■□□ 2.96
SHROOM4Q9ULL8 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC33.52■■■□□ 2.96
SHROOM4Q9ULL8 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC33.51■■■□□ 2.96
SHROOM4Q9ULL8 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC33.51■■■□□ 2.96
SHROOM4Q9ULL8 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC33.51■■■□□ 2.96
SHROOM4Q9ULL8 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC33.51■■■□□ 2.96
SHROOM4Q9ULL8 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC33.51■■■□□ 2.96
SHROOM4Q9ULL8 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC33.51■■■□□ 2.96
SHROOM4Q9ULL8 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC33.51■■■□□ 2.96
SHROOM4Q9ULL8 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC33.51■■■□□ 2.96
SHROOM4Q9ULL8 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC33.51■■■□□ 2.96
SHROOM4Q9ULL8 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC33.51■■■□□ 2.96
SHROOM4Q9ULL8 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC33.51■■■□□ 2.96
SHROOM4Q9ULL8 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC33.51■■■□□ 2.95
SHROOM4Q9ULL8 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC33.51■■■□□ 2.95
SHROOM4Q9ULL8 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC33.51■■■□□ 2.95
SHROOM4Q9ULL8 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC33.5■■■□□ 2.95
SHROOM4Q9ULL8 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC33.5■■■□□ 2.95
SHROOM4Q9ULL8 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC33.5■■■□□ 2.95
SHROOM4Q9ULL8 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC33.5■■■□□ 2.95
SHROOM4Q9ULL8 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC33.5■■■□□ 2.95
SHROOM4Q9ULL8 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC33.5■■■□□ 2.95
SHROOM4Q9ULL8 ACTG1P14-201ENST00000446382 1122 ntBASIC33.5■■■□□ 2.95
SHROOM4Q9ULL8 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC33.5■■■□□ 2.95
SHROOM4Q9ULL8 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC33.5■■■□□ 2.95
SHROOM4Q9ULL8 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC33.5■■■□□ 2.95
SHROOM4Q9ULL8 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC33.5■■■□□ 2.95
SHROOM4Q9ULL8 AL589182.2-201ENST00000619332 1049 ntBASIC33.5■■■□□ 2.95
SHROOM4Q9ULL8 Z92544.3-201ENST00000624747 417 ntBASIC33.5■■■□□ 2.95
SHROOM4Q9ULL8 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC33.5■■■□□ 2.95
SHROOM4Q9ULL8 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC33.5■■■□□ 2.95
SHROOM4Q9ULL8 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC33.5■■■□□ 2.95
SHROOM4Q9ULL8 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC33.5■■■□□ 2.95
SHROOM4Q9ULL8 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC33.5■■■□□ 2.95
SHROOM4Q9ULL8 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC33.5■■■□□ 2.95
SHROOM4Q9ULL8 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC33.5■■■□□ 2.95
SHROOM4Q9ULL8 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC33.5■■■□□ 2.95
SHROOM4Q9ULL8 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC33.5■■■□□ 2.95
SHROOM4Q9ULL8 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC33.5■■■□□ 2.95
SHROOM4Q9ULL8 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC33.5■■■□□ 2.95
SHROOM4Q9ULL8 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC33.5■■■□□ 2.95
SHROOM4Q9ULL8 SPDYE21P-201ENST00000413323 827 ntBASIC33.5■■■□□ 2.95
SHROOM4Q9ULL8 PAWRP1-201ENST00000451083 565 ntBASIC33.5■■■□□ 2.95
SHROOM4Q9ULL8 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC33.5■■■□□ 2.95
SHROOM4Q9ULL8 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC33.5■■■□□ 2.95
SHROOM4Q9ULL8 AL031432.2-201ENST00000566714 459 ntBASIC33.5■■■□□ 2.95
SHROOM4Q9ULL8 AL928711.1-201ENST00000570165 459 ntBASIC33.5■■■□□ 2.95
SHROOM4Q9ULL8 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC33.5■■■□□ 2.95
SHROOM4Q9ULL8 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC33.5■■■□□ 2.95
SHROOM4Q9ULL8 AC015911.4-201ENST00000588022 1070 ntBASIC33.5■■■□□ 2.95
SHROOM4Q9ULL8 AC005498.2-205ENST00000593218 784 ntBASIC33.5■■■□□ 2.95
SHROOM4Q9ULL8 SIRPAP1-201ENST00000448467 1770 ntBASIC33.49■■■□□ 2.95
SHROOM4Q9ULL8 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC33.49■■■□□ 2.95
SHROOM4Q9ULL8 ADM-208ENST00000534464 1640 ntTSL 2 BASIC33.49■■■□□ 2.95
SHROOM4Q9ULL8 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC33.49■■■□□ 2.95
SHROOM4Q9ULL8 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC33.49■■■□□ 2.95
SHROOM4Q9ULL8 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC33.49■■■□□ 2.95
SHROOM4Q9ULL8 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC33.49■■■□□ 2.95
SHROOM4Q9ULL8 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC33.49■■■□□ 2.95
SHROOM4Q9ULL8 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC33.49■■■□□ 2.95
SHROOM4Q9ULL8 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC33.49■■■□□ 2.95
SHROOM4Q9ULL8 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC33.49■■■□□ 2.95
SHROOM4Q9ULL8 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC33.49■■■□□ 2.95
SHROOM4Q9ULL8 AL513210.1-201ENST00000629608 234 ntBASIC33.49■■■□□ 2.95
SHROOM4Q9ULL8 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC33.49■■■□□ 2.95
SHROOM4Q9ULL8 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC33.48■■■□□ 2.95
SHROOM4Q9ULL8 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC33.48■■■□□ 2.95
SHROOM4Q9ULL8 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC33.48■■■□□ 2.95
SHROOM4Q9ULL8 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC33.48■■■□□ 2.95
SHROOM4Q9ULL8 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC33.48■■■□□ 2.95
SHROOM4Q9ULL8 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC33.48■■■□□ 2.95
SHROOM4Q9ULL8 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC33.48■■■□□ 2.95
SHROOM4Q9ULL8 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC33.48■■■□□ 2.95
SHROOM4Q9ULL8 CBR1-202ENST00000399191 838 ntTSL 3 BASIC33.48■■■□□ 2.95
SHROOM4Q9ULL8 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC33.48■■■□□ 2.95
SHROOM4Q9ULL8 IGLL3P-201ENST00000412472 434 ntBASIC33.48■■■□□ 2.95
SHROOM4Q9ULL8 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC33.48■■■□□ 2.95
SHROOM4Q9ULL8 AC096633.1-201ENST00000422446 749 ntBASIC33.48■■■□□ 2.95
SHROOM4Q9ULL8 CEND1P1-201ENST00000451006 455 ntBASIC33.48■■■□□ 2.95
SHROOM4Q9ULL8 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC33.48■■■□□ 2.95
SHROOM4Q9ULL8 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC33.48■■■□□ 2.95
SHROOM4Q9ULL8 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC33.48■■■□□ 2.95
SHROOM4Q9ULL8 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC33.48■■■□□ 2.95
SHROOM4Q9ULL8 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC33.47■■■□□ 2.95
SHROOM4Q9ULL8 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC33.47■■■□□ 2.95
SHROOM4Q9ULL8 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC33.47■■■□□ 2.95
SHROOM4Q9ULL8 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC33.47■■■□□ 2.95
SHROOM4Q9ULL8 CD82-202ENST00000342935 967 ntTSL 5 BASIC33.47■■■□□ 2.95
SHROOM4Q9ULL8 CRYGEP-201ENST00000412192 528 ntBASIC33.47■■■□□ 2.95
SHROOM4Q9ULL8 AC018845.2-201ENST00000568326 409 ntBASIC33.47■■■□□ 2.95
SHROOM4Q9ULL8 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC33.47■■■□□ 2.95
SHROOM4Q9ULL8 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC33.47■■■□□ 2.95
SHROOM4Q9ULL8 AD001527.2-201ENST00000622994 785 ntBASIC33.47■■■□□ 2.95
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms