Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIMA1Q9UHB6 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIMA1Q9UHB6 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC19.39■□□□□ 0.69
LIMA1Q9UHB6 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC19.39■□□□□ 0.69
LIMA1Q9UHB6 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIMA1Q9UHB6 SPDYE15P-201ENST00000424157 909 ntBASIC19.39■□□□□ 0.69
LIMA1Q9UHB6 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC19.39■□□□□ 0.69
LIMA1Q9UHB6 PPOX-214ENST00000535223 664 ntTSL 3 BASIC19.39■□□□□ 0.69
LIMA1Q9UHB6 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC19.39■□□□□ 0.69
LIMA1Q9UHB6 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIMA1Q9UHB6 AC140113.3-201ENST00000605663 199 ntBASIC19.39■□□□□ 0.69
LIMA1Q9UHB6 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC19.39■□□□□ 0.69
LIMA1Q9UHB6 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC19.39■□□□□ 0.69
LIMA1Q9UHB6 LINC01311-201ENST00000565162 1445 ntBASIC19.39■□□□□ 0.69
LIMA1Q9UHB6 AC116353.5-201ENST00000638148 1699 ntBASIC19.39■□□□□ 0.69
LIMA1Q9UHB6 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIMA1Q9UHB6 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC19.39■□□□□ 0.69
LIMA1Q9UHB6 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIMA1Q9UHB6 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIMA1Q9UHB6 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIMA1Q9UHB6 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LIMA1Q9UHB6 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIMA1Q9UHB6 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC19.38■□□□□ 0.69
LIMA1Q9UHB6 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LIMA1Q9UHB6 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LIMA1Q9UHB6 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIMA1Q9UHB6 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIMA1Q9UHB6 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIMA1Q9UHB6 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC19.38■□□□□ 0.69
LIMA1Q9UHB6 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LIMA1Q9UHB6 SLC25A3P1-201ENST00000443844 931 ntBASIC19.38■□□□□ 0.69
LIMA1Q9UHB6 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LIMA1Q9UHB6 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC19.38■□□□□ 0.69
LIMA1Q9UHB6 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC19.38■□□□□ 0.69
LIMA1Q9UHB6 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC19.38■□□□□ 0.69
LIMA1Q9UHB6 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC19.38■□□□□ 0.69
LIMA1Q9UHB6 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC19.38■□□□□ 0.69
LIMA1Q9UHB6 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
LIMA1Q9UHB6 LITAF-220ENST00000620789 692 ntTSL 5 BASIC19.38■□□□□ 0.69
LIMA1Q9UHB6 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIMA1Q9UHB6 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIMA1Q9UHB6 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIMA1Q9UHB6 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC19.38■□□□□ 0.69
LIMA1Q9UHB6 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIMA1Q9UHB6 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
LIMA1Q9UHB6 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
LIMA1Q9UHB6 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIMA1Q9UHB6 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIMA1Q9UHB6 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
LIMA1Q9UHB6 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
LIMA1Q9UHB6 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIMA1Q9UHB6 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIMA1Q9UHB6 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC19.37■□□□□ 0.69
LIMA1Q9UHB6 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC19.37■□□□□ 0.69
LIMA1Q9UHB6 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
LIMA1Q9UHB6 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIMA1Q9UHB6 DDT-203ENST00000403754 569 ntTSL 3 BASIC19.37■□□□□ 0.69
LIMA1Q9UHB6 AL596275.1-201ENST00000423464 877 ntBASIC19.37■□□□□ 0.69
LIMA1Q9UHB6 DDT-206ENST00000430101 573 ntTSL 2 BASIC19.37■□□□□ 0.69
LIMA1Q9UHB6 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC19.37■□□□□ 0.69
LIMA1Q9UHB6 AC010203.1-204ENST00000548782 407 ntBASIC19.37■□□□□ 0.69
LIMA1Q9UHB6 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC19.37■□□□□ 0.69
LIMA1Q9UHB6 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC19.37■□□□□ 0.69
LIMA1Q9UHB6 AL031432.5-201ENST00000641059 760 ntBASIC19.37■□□□□ 0.69
LIMA1Q9UHB6 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
LIMA1Q9UHB6 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIMA1Q9UHB6 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC19.37■□□□□ 0.69
LIMA1Q9UHB6 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC19.37■□□□□ 0.69
LIMA1Q9UHB6 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIMA1Q9UHB6 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
LIMA1Q9UHB6 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC19.37■□□□□ 0.69
LIMA1Q9UHB6 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIMA1Q9UHB6 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
LIMA1Q9UHB6 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC19.36■□□□□ 0.69
LIMA1Q9UHB6 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIMA1Q9UHB6 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIMA1Q9UHB6 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIMA1Q9UHB6 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC19.36■□□□□ 0.69
LIMA1Q9UHB6 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC19.36■□□□□ 0.69
LIMA1Q9UHB6 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LIMA1Q9UHB6 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC19.36■□□□□ 0.69
LIMA1Q9UHB6 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC19.36■□□□□ 0.69
LIMA1Q9UHB6 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LIMA1Q9UHB6 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
LIMA1Q9UHB6 IGHGP-201ENST00000390555 1178 ntBASIC19.36■□□□□ 0.69
LIMA1Q9UHB6 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC19.36■□□□□ 0.69
LIMA1Q9UHB6 STARP1-201ENST00000397973 869 ntBASIC19.36■□□□□ 0.69
LIMA1Q9UHB6 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LIMA1Q9UHB6 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
LIMA1Q9UHB6 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC19.36■□□□□ 0.69
LIMA1Q9UHB6 COX11P1-201ENST00000489116 835 ntBASIC19.36■□□□□ 0.69
LIMA1Q9UHB6 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC19.36■□□□□ 0.69
LIMA1Q9UHB6 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIMA1Q9UHB6 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
LIMA1Q9UHB6 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIMA1Q9UHB6 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIMA1Q9UHB6 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIMA1Q9UHB6 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LIMA1Q9UHB6 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC19.36■□□□□ 0.69
LIMA1Q9UHB6 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 66.3 ms