Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC15.73■□□□□ 0.11
MMP28Q9H239 AL135905.2-201ENST00000584934 1404 ntBASIC15.73■□□□□ 0.11
MMP28Q9H239 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
MMP28Q9H239 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC15.73■□□□□ 0.11
MMP28Q9H239 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
MMP28Q9H239 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
MMP28Q9H239 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
MMP28Q9H239 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MMP28Q9H239 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MMP28Q9H239 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC15.73■□□□□ 0.11
MMP28Q9H239 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
MMP28Q9H239 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
MMP28Q9H239 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC15.73■□□□□ 0.11
MMP28Q9H239 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
MMP28Q9H239 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
MMP28Q9H239 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
MMP28Q9H239 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
MMP28Q9H239 PCDHB17P-201ENST00000539533 2393 ntBASIC15.72■□□□□ 0.11
MMP28Q9H239 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
MMP28Q9H239 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
MMP28Q9H239 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC15.72■□□□□ 0.11
MMP28Q9H239 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
MMP28Q9H239 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC15.72■□□□□ 0.11
MMP28Q9H239 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
MMP28Q9H239 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
MMP28Q9H239 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
MMP28Q9H239 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
MMP28Q9H239 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
MMP28Q9H239 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
MMP28Q9H239 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
MMP28Q9H239 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
MMP28Q9H239 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
MMP28Q9H239 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC15.72■□□□□ 0.11
MMP28Q9H239 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
MMP28Q9H239 AL160286.2-201ENST00000567150 934 ntBASIC15.72■□□□□ 0.11
MMP28Q9H239 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC15.72■□□□□ 0.11
MMP28Q9H239 AL445675.2-201ENST00000620291 557 ntBASIC15.72■□□□□ 0.11
MMP28Q9H239 AC068587.9-201ENST00000641814 219 ntBASIC15.72■□□□□ 0.11
MMP28Q9H239 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
MMP28Q9H239 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC15.72■□□□□ 0.11
MMP28Q9H239 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC15.72■□□□□ 0.11
MMP28Q9H239 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
MMP28Q9H239 FRMD6-AS1-201ENST00000617151 2229 ntBASIC15.72■□□□□ 0.11
MMP28Q9H239 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
MMP28Q9H239 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC15.72■□□□□ 0.11
MMP28Q9H239 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
MMP28Q9H239 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
MMP28Q9H239 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC15.72■□□□□ 0.11
MMP28Q9H239 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC15.72■□□□□ 0.11
MMP28Q9H239 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
MMP28Q9H239 AL355312.1-201ENST00000407115 2176 ntBASIC15.72■□□□□ 0.11
MMP28Q9H239 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
MMP28Q9H239 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
MMP28Q9H239 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
MMP28Q9H239 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
MMP28Q9H239 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
MMP28Q9H239 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
MMP28Q9H239 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC15.71■□□□□ 0.11
MMP28Q9H239 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC15.71■□□□□ 0.11
MMP28Q9H239 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
MMP28Q9H239 KRT8P45-201ENST00000414328 1447 ntBASIC15.71■□□□□ 0.11
MMP28Q9H239 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
MMP28Q9H239 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
MMP28Q9H239 TSPY26P-202ENST00000565928 3884 ntBASIC15.71■□□□□ 0.11
MMP28Q9H239 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
MMP28Q9H239 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC15.71■□□□□ 0.11
MMP28Q9H239 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
MMP28Q9H239 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
MMP28Q9H239 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
MMP28Q9H239 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
MMP28Q9H239 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC15.71■□□□□ 0.11
MMP28Q9H239 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC15.71■□□□□ 0.11
MMP28Q9H239 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
MMP28Q9H239 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC15.71■□□□□ 0.11
MMP28Q9H239 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
MMP28Q9H239 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
MMP28Q9H239 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC15.71■□□□□ 0.11
MMP28Q9H239 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
MMP28Q9H239 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
MMP28Q9H239 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
MMP28Q9H239 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC15.71■□□□□ 0.11
MMP28Q9H239 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
MMP28Q9H239 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
MMP28Q9H239 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
MMP28Q9H239 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
MMP28Q9H239 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
MMP28Q9H239 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MMP28Q9H239 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC15.7■□□□□ 0.1
MMP28Q9H239 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
MMP28Q9H239 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
MMP28Q9H239 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
MMP28Q9H239 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC15.7■□□□□ 0.1
MMP28Q9H239 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MMP28Q9H239 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
MMP28Q9H239 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MMP28Q9H239 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MMP28Q9H239 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MMP28Q9H239 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MMP28Q9H239 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MMP28Q9H239 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms