Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
RPAP1Q9BWH6 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
RPAP1Q9BWH6 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
RPAP1Q9BWH6 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RPAP1Q9BWH6 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RPAP1Q9BWH6 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RPAP1Q9BWH6 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC21.54■■□□□ 1.04
RPAP1Q9BWH6 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RPAP1Q9BWH6 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
RPAP1Q9BWH6 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
RPAP1Q9BWH6 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
RPAP1Q9BWH6 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC21.53■■□□□ 1.04
RPAP1Q9BWH6 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
RPAP1Q9BWH6 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
RPAP1Q9BWH6 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC21.53■■□□□ 1.04
RPAP1Q9BWH6 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
RPAP1Q9BWH6 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
RPAP1Q9BWH6 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC21.53■■□□□ 1.04
RPAP1Q9BWH6 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC21.53■■□□□ 1.04
RPAP1Q9BWH6 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC21.53■■□□□ 1.04
RPAP1Q9BWH6 AC009533.2-201ENST00000543664 586 ntBASIC21.53■■□□□ 1.04
RPAP1Q9BWH6 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
RPAP1Q9BWH6 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RPAP1Q9BWH6 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
RPAP1Q9BWH6 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
RPAP1Q9BWH6 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC21.53■■□□□ 1.04
RPAP1Q9BWH6 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC21.53■■□□□ 1.04
RPAP1Q9BWH6 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
RPAP1Q9BWH6 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
RPAP1Q9BWH6 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RPAP1Q9BWH6 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
RPAP1Q9BWH6 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
RPAP1Q9BWH6 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RPAP1Q9BWH6 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
RPAP1Q9BWH6 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
RPAP1Q9BWH6 AC132008.2-207ENST00000454517 770 ntBASIC21.52■■□□□ 1.04
RPAP1Q9BWH6 RNPS1P1-201ENST00000507437 918 ntBASIC21.52■■□□□ 1.04
RPAP1Q9BWH6 AC073648.2-201ENST00000510116 352 ntBASIC21.52■■□□□ 1.04
RPAP1Q9BWH6 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC21.52■■□□□ 1.04
RPAP1Q9BWH6 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC21.52■■□□□ 1.04
RPAP1Q9BWH6 MNT-208ENST00000575394 606 ntTSL 4 BASIC21.52■■□□□ 1.04
RPAP1Q9BWH6 AC011467.2-201ENST00000598425 242 ntBASIC21.52■■□□□ 1.04
RPAP1Q9BWH6 AP001269.4-201ENST00000609611 512 ntBASIC21.52■■□□□ 1.04
RPAP1Q9BWH6 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
RPAP1Q9BWH6 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
RPAP1Q9BWH6 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC21.52■■□□□ 1.04
RPAP1Q9BWH6 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
RPAP1Q9BWH6 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RPAP1Q9BWH6 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
RPAP1Q9BWH6 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC21.52■■□□□ 1.04
RPAP1Q9BWH6 AC006116.8-202ENST00000587620 1550 ntBASIC21.52■■□□□ 1.04
RPAP1Q9BWH6 GNAS-203ENST00000306120 1878 ntBASIC21.52■■□□□ 1.04
RPAP1Q9BWH6 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
RPAP1Q9BWH6 INTS4P1-201ENST00000438455 1935 ntBASIC21.52■■□□□ 1.04
RPAP1Q9BWH6 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC21.52■■□□□ 1.04
RPAP1Q9BWH6 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RPAP1Q9BWH6 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RPAP1Q9BWH6 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
RPAP1Q9BWH6 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC21.52■■□□□ 1.04
RPAP1Q9BWH6 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RPAP1Q9BWH6 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC21.52■■□□□ 1.04
RPAP1Q9BWH6 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
RPAP1Q9BWH6 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC21.52■■□□□ 1.04
RPAP1Q9BWH6 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC21.52■■□□□ 1.04
RPAP1Q9BWH6 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC21.51■■□□□ 1.03
RPAP1Q9BWH6 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
RPAP1Q9BWH6 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
RPAP1Q9BWH6 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
RPAP1Q9BWH6 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RPAP1Q9BWH6 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RPAP1Q9BWH6 KRT18P55-202ENST00000578578 1546 ntBASIC21.51■■□□□ 1.03
RPAP1Q9BWH6 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC21.51■■□□□ 1.03
RPAP1Q9BWH6 HIST2H3DP1-201ENST00000401004 416 ntBASIC21.51■■□□□ 1.03
RPAP1Q9BWH6 MTCL1P1-201ENST00000446207 792 ntBASIC21.51■■□□□ 1.03
RPAP1Q9BWH6 SCARNA2-201ENST00000458748 420 ntBASIC21.51■■□□□ 1.03
RPAP1Q9BWH6 KRT18P58-201ENST00000527480 1120 ntBASIC21.51■■□□□ 1.03
RPAP1Q9BWH6 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC21.51■■□□□ 1.03
RPAP1Q9BWH6 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC21.51■■□□□ 1.03
RPAP1Q9BWH6 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC21.51■■□□□ 1.03
RPAP1Q9BWH6 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
RPAP1Q9BWH6 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RPAP1Q9BWH6 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC21.51■■□□□ 1.03
RPAP1Q9BWH6 WAC-202ENST00000347934 2839 ntTSL 5 BASIC21.51■■□□□ 1.03
RPAP1Q9BWH6 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RPAP1Q9BWH6 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
RPAP1Q9BWH6 GNE-204ENST00000539208 2190 ntTSL 2 BASIC21.51■■□□□ 1.03
RPAP1Q9BWH6 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
RPAP1Q9BWH6 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RPAP1Q9BWH6 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RPAP1Q9BWH6 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC21.51■■□□□ 1.03
RPAP1Q9BWH6 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RPAP1Q9BWH6 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
RPAP1Q9BWH6 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
RPAP1Q9BWH6 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
RPAP1Q9BWH6 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RPAP1Q9BWH6 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
RPAP1Q9BWH6 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RPAP1Q9BWH6 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
RPAP1Q9BWH6 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
RPAP1Q9BWH6 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC21.5■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms