Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CDX2Q99626 STK19B-204ENST00000512515 211 ntBASIC18.38■□□□□ 0.53
CDX2Q99626 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
CDX2Q99626 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC18.38■□□□□ 0.53
CDX2Q99626 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC18.38■□□□□ 0.53
CDX2Q99626 LINC01225-203ENST00000563550 1244 ntBASIC18.38■□□□□ 0.53
CDX2Q99626 MIR4525-201ENST00000580000 75 ntBASIC18.38■□□□□ 0.53
CDX2Q99626 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC18.38■□□□□ 0.53
CDX2Q99626 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDX2Q99626 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
CDX2Q99626 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC18.38■□□□□ 0.53
CDX2Q99626 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
CDX2Q99626 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDX2Q99626 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CDX2Q99626 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDX2Q99626 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDX2Q99626 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
CDX2Q99626 GNAS-203ENST00000306120 1878 ntBASIC18.37■□□□□ 0.53
CDX2Q99626 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
CDX2Q99626 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.37■□□□□ 0.53
CDX2Q99626 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDX2Q99626 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CDX2Q99626 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
CDX2Q99626 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDX2Q99626 GATD1-206ENST00000526325 756 ntTSL 5 BASIC18.37■□□□□ 0.53
CDX2Q99626 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC18.37■□□□□ 0.53
CDX2Q99626 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC18.37■□□□□ 0.53
CDX2Q99626 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC18.37■□□□□ 0.53
CDX2Q99626 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDX2Q99626 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC18.37■□□□□ 0.53
CDX2Q99626 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDX2Q99626 IGHV3-72-202ENST00000621503 303 ntBASIC18.37■□□□□ 0.53
CDX2Q99626 AL590560.3-201ENST00000623350 461 ntBASIC18.37■□□□□ 0.53
CDX2Q99626 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC18.37■□□□□ 0.53
CDX2Q99626 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDX2Q99626 AC100757.3-201ENST00000622361 1406 ntBASIC18.37■□□□□ 0.53
CDX2Q99626 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CDX2Q99626 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CDX2Q99626 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC18.37■□□□□ 0.53
CDX2Q99626 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.37■□□□□ 0.53
CDX2Q99626 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDX2Q99626 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CDX2Q99626 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDX2Q99626 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDX2Q99626 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDX2Q99626 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDX2Q99626 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDX2Q99626 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
CDX2Q99626 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CDX2Q99626 AC098614.1-201ENST00000368528 745 ntBASIC18.36■□□□□ 0.53
CDX2Q99626 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDX2Q99626 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
CDX2Q99626 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDX2Q99626 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC18.36■□□□□ 0.53
CDX2Q99626 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
CDX2Q99626 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDX2Q99626 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC18.36■□□□□ 0.53
CDX2Q99626 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CDX2Q99626 TSSK5P-201ENST00000423978 907 ntBASIC18.36■□□□□ 0.53
CDX2Q99626 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC18.36■□□□□ 0.53
CDX2Q99626 GALT-202ENST00000450095 1280 ntTSL 2 BASIC18.36■□□□□ 0.53
CDX2Q99626 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CDX2Q99626 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC18.36■□□□□ 0.53
CDX2Q99626 AC027369.6-201ENST00000525520 931 ntBASIC18.36■□□□□ 0.53
CDX2Q99626 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CDX2Q99626 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CDX2Q99626 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CDX2Q99626 KRT8P23-201ENST00000560090 1207 ntBASIC18.36■□□□□ 0.53
CDX2Q99626 AC022144.1-201ENST00000602255 1580 ntBASIC18.36■□□□□ 0.53
CDX2Q99626 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC18.36■□□□□ 0.53
CDX2Q99626 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDX2Q99626 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CDX2Q99626 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC18.35■□□□□ 0.53
CDX2Q99626 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDX2Q99626 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CDX2Q99626 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CDX2Q99626 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDX2Q99626 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDX2Q99626 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CDX2Q99626 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
CDX2Q99626 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CDX2Q99626 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CDX2Q99626 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDX2Q99626 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDX2Q99626 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC18.35■□□□□ 0.53
CDX2Q99626 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC18.35■□□□□ 0.53
CDX2Q99626 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CDX2Q99626 PARP8-206ENST00000503665 572 ntTSL 4 BASIC18.35■□□□□ 0.53
CDX2Q99626 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
CDX2Q99626 FAM8A2P-201ENST00000528813 1142 ntBASIC18.35■□□□□ 0.53
CDX2Q99626 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC18.35■□□□□ 0.53
CDX2Q99626 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
CDX2Q99626 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC18.35■□□□□ 0.53
CDX2Q99626 AC068587.10-201ENST00000641210 219 ntBASIC18.35■□□□□ 0.53
CDX2Q99626 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CDX2Q99626 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
CDX2Q99626 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC18.35■□□□□ 0.53
CDX2Q99626 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC18.35■□□□□ 0.53
CDX2Q99626 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
CDX2Q99626 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms