Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17.16■□□□□ 0.34
CLIP3Q96DZ5 LTF-203ENST00000426532 2494 ntTSL 2 BASIC17.16■□□□□ 0.34
CLIP3Q96DZ5 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CLIP3Q96DZ5 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLIP3Q96DZ5 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.16■□□□□ 0.34
CLIP3Q96DZ5 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
CLIP3Q96DZ5 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLIP3Q96DZ5 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
CLIP3Q96DZ5 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLIP3Q96DZ5 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC17.16■□□□□ 0.34
CLIP3Q96DZ5 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLIP3Q96DZ5 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLIP3Q96DZ5 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC17.15■□□□□ 0.34
CLIP3Q96DZ5 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLIP3Q96DZ5 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLIP3Q96DZ5 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLIP3Q96DZ5 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CLIP3Q96DZ5 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLIP3Q96DZ5 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.15■□□□□ 0.34
CLIP3Q96DZ5 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CLIP3Q96DZ5 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CLIP3Q96DZ5 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC17.15■□□□□ 0.34
CLIP3Q96DZ5 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC17.15■□□□□ 0.34
CLIP3Q96DZ5 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLIP3Q96DZ5 CDV3-207ENST00000508481 661 ntTSL 3 BASIC17.15■□□□□ 0.34
CLIP3Q96DZ5 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CLIP3Q96DZ5 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC17.15■□□□□ 0.34
CLIP3Q96DZ5 AL353801.3-201ENST00000609898 542 ntBASIC17.15■□□□□ 0.34
CLIP3Q96DZ5 CCNC-219ENST00000627680 896 ntTSL 5 BASIC17.15■□□□□ 0.34
CLIP3Q96DZ5 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLIP3Q96DZ5 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC17.15■□□□□ 0.34
CLIP3Q96DZ5 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
CLIP3Q96DZ5 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLIP3Q96DZ5 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLIP3Q96DZ5 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLIP3Q96DZ5 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLIP3Q96DZ5 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLIP3Q96DZ5 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLIP3Q96DZ5 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
CLIP3Q96DZ5 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CLIP3Q96DZ5 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLIP3Q96DZ5 GMCL1P1-201ENST00000463439 1581 ntBASIC17.15■□□□□ 0.34
CLIP3Q96DZ5 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC17.15■□□□□ 0.34
CLIP3Q96DZ5 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLIP3Q96DZ5 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.34
CLIP3Q96DZ5 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.34
CLIP3Q96DZ5 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.14■□□□□ 0.34
CLIP3Q96DZ5 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC17.14■□□□□ 0.33
CLIP3Q96DZ5 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CLIP3Q96DZ5 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CLIP3Q96DZ5 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CLIP3Q96DZ5 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLIP3Q96DZ5 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC17.14■□□□□ 0.33
CLIP3Q96DZ5 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLIP3Q96DZ5 POM121L3P-201ENST00000419331 1163 ntBASIC17.14■□□□□ 0.33
CLIP3Q96DZ5 AC096582.2-201ENST00000510860 516 ntBASIC17.14■□□□□ 0.33
CLIP3Q96DZ5 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLIP3Q96DZ5 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
CLIP3Q96DZ5 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC17.14■□□□□ 0.33
CLIP3Q96DZ5 AC009154.2-201ENST00000621177 724 ntBASIC17.14■□□□□ 0.33
CLIP3Q96DZ5 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
CLIP3Q96DZ5 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLIP3Q96DZ5 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CLIP3Q96DZ5 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CLIP3Q96DZ5 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLIP3Q96DZ5 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC17.14■□□□□ 0.33
CLIP3Q96DZ5 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CLIP3Q96DZ5 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC17.14■□□□□ 0.33
CLIP3Q96DZ5 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLIP3Q96DZ5 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLIP3Q96DZ5 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLIP3Q96DZ5 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLIP3Q96DZ5 KRT8P10-201ENST00000450021 1447 ntBASIC17.13■□□□□ 0.33
CLIP3Q96DZ5 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CLIP3Q96DZ5 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.13■□□□□ 0.33
CLIP3Q96DZ5 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CLIP3Q96DZ5 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLIP3Q96DZ5 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC17.13■□□□□ 0.33
CLIP3Q96DZ5 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC17.13■□□□□ 0.33
CLIP3Q96DZ5 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.13■□□□□ 0.33
CLIP3Q96DZ5 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.13■□□□□ 0.33
CLIP3Q96DZ5 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLIP3Q96DZ5 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
CLIP3Q96DZ5 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC17.13■□□□□ 0.33
CLIP3Q96DZ5 AC068472.1-201ENST00000474589 881 ntBASIC17.13■□□□□ 0.33
CLIP3Q96DZ5 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CLIP3Q96DZ5 AL031008.1-201ENST00000619963 541 ntBASIC17.13■□□□□ 0.33
CLIP3Q96DZ5 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC17.13■□□□□ 0.33
CLIP3Q96DZ5 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.13■□□□□ 0.33
CLIP3Q96DZ5 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC17.13■□□□□ 0.33
CLIP3Q96DZ5 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CLIP3Q96DZ5 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLIP3Q96DZ5 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLIP3Q96DZ5 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLIP3Q96DZ5 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLIP3Q96DZ5 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
CLIP3Q96DZ5 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CLIP3Q96DZ5 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.13■□□□□ 0.33
CLIP3Q96DZ5 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLIP3Q96DZ5 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms