Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 AC005336.2-201ENST00000593183 939 ntBASIC19.67■□□□□ 0.74
HPS3Q969F9 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC19.67■□□□□ 0.74
HPS3Q969F9 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HPS3Q969F9 AC133963.1-201ENST00000504166 1679 ntBASIC19.67■□□□□ 0.74
HPS3Q969F9 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC19.67■□□□□ 0.74
HPS3Q969F9 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC19.67■□□□□ 0.74
HPS3Q969F9 HARS-201ENST00000307633 1780 ntTSL 2 BASIC19.67■□□□□ 0.74
HPS3Q969F9 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HPS3Q969F9 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC19.67■□□□□ 0.74
HPS3Q969F9 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC19.67■□□□□ 0.74
HPS3Q969F9 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
HPS3Q969F9 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HPS3Q969F9 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
HPS3Q969F9 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HPS3Q969F9 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HPS3Q969F9 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC19.66■□□□□ 0.74
HPS3Q969F9 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
HPS3Q969F9 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC19.66■□□□□ 0.74
HPS3Q969F9 CEP83-AS1-201ENST00000623122 2482 ntBASIC19.66■□□□□ 0.74
HPS3Q969F9 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
HPS3Q969F9 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
HPS3Q969F9 ADM-208ENST00000534464 1640 ntTSL 2 BASIC19.66■□□□□ 0.74
HPS3Q969F9 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
HPS3Q969F9 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HPS3Q969F9 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC19.66■□□□□ 0.74
HPS3Q969F9 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HPS3Q969F9 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
HPS3Q969F9 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HPS3Q969F9 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HPS3Q969F9 ARMC10P1-201ENST00000313754 855 ntBASIC19.66■□□□□ 0.74
HPS3Q969F9 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HPS3Q969F9 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HPS3Q969F9 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC19.66■□□□□ 0.74
HPS3Q969F9 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC19.66■□□□□ 0.74
HPS3Q969F9 AP002383.4-201ENST00000442518 975 ntBASIC19.66■□□□□ 0.74
HPS3Q969F9 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
HPS3Q969F9 BX276092.5-203ENST00000456199 560 ntBASIC19.66■□□□□ 0.74
HPS3Q969F9 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC19.66■□□□□ 0.74
HPS3Q969F9 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC19.66■□□□□ 0.74
HPS3Q969F9 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC19.66■□□□□ 0.74
HPS3Q969F9 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
HPS3Q969F9 AC116407.2-201ENST00000613639 860 ntBASIC19.66■□□□□ 0.74
HPS3Q969F9 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HPS3Q969F9 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HPS3Q969F9 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HPS3Q969F9 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HPS3Q969F9 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
HPS3Q969F9 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
HPS3Q969F9 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC19.66■□□□□ 0.74
HPS3Q969F9 HTR7P1-202ENST00000624664 4411 ntBASIC19.66■□□□□ 0.74
HPS3Q969F9 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HPS3Q969F9 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HPS3Q969F9 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC19.66■□□□□ 0.74
HPS3Q969F9 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
HPS3Q969F9 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC19.65■□□□□ 0.74
HPS3Q969F9 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
HPS3Q969F9 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HPS3Q969F9 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HPS3Q969F9 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HPS3Q969F9 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HPS3Q969F9 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HPS3Q969F9 DDX43P3-201ENST00000441064 443 ntBASIC19.65■□□□□ 0.74
HPS3Q969F9 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC19.65■□□□□ 0.74
HPS3Q969F9 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC19.65■□□□□ 0.74
HPS3Q969F9 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC19.65■□□□□ 0.74
HPS3Q969F9 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HPS3Q969F9 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC19.65■□□□□ 0.74
HPS3Q969F9 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
HPS3Q969F9 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
HPS3Q969F9 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC19.65■□□□□ 0.74
HPS3Q969F9 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
HPS3Q969F9 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
HPS3Q969F9 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
HPS3Q969F9 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HPS3Q969F9 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
HPS3Q969F9 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC19.65■□□□□ 0.74
HPS3Q969F9 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
HPS3Q969F9 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC19.64■□□□□ 0.74
HPS3Q969F9 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
HPS3Q969F9 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
HPS3Q969F9 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
HPS3Q969F9 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
HPS3Q969F9 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HPS3Q969F9 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HPS3Q969F9 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HPS3Q969F9 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
HPS3Q969F9 COPS8-203ENST00000409334 794 ntTSL 5 BASIC19.64■□□□□ 0.73
HPS3Q969F9 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HPS3Q969F9 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC19.64■□□□□ 0.73
HPS3Q969F9 AC090616.6-201ENST00000582640 721 ntBASIC19.64■□□□□ 0.73
HPS3Q969F9 AL353801.3-201ENST00000609898 542 ntBASIC19.64■□□□□ 0.73
HPS3Q969F9 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HPS3Q969F9 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC19.64■□□□□ 0.73
HPS3Q969F9 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HPS3Q969F9 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HPS3Q969F9 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HPS3Q969F9 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HPS3Q969F9 AC080080.1-201ENST00000625121 2420 ntBASIC19.64■□□□□ 0.73
HPS3Q969F9 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
HPS3Q969F9 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms