Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
DEPDC4Q8N2C3 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
DEPDC4Q8N2C3 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
DEPDC4Q8N2C3 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
DEPDC4Q8N2C3 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
DEPDC4Q8N2C3 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
DEPDC4Q8N2C3 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
DEPDC4Q8N2C3 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
DEPDC4Q8N2C3 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
DEPDC4Q8N2C3 ECEL1P2-202ENST00000465689 757 ntBASIC16.57■□□□□ 0.24
DEPDC4Q8N2C3 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
DEPDC4Q8N2C3 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC16.57■□□□□ 0.24
DEPDC4Q8N2C3 CA15P1-201ENST00000481698 905 ntBASIC16.57■□□□□ 0.24
DEPDC4Q8N2C3 CKBP1-201ENST00000565489 1086 ntBASIC16.57■□□□□ 0.24
DEPDC4Q8N2C3 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
DEPDC4Q8N2C3 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
DEPDC4Q8N2C3 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
DEPDC4Q8N2C3 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.57■□□□□ 0.24
DEPDC4Q8N2C3 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.57■□□□□ 0.24
DEPDC4Q8N2C3 AL513477.1-201ENST00000602865 2407 ntBASIC16.57■□□□□ 0.24
DEPDC4Q8N2C3 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
DEPDC4Q8N2C3 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
DEPDC4Q8N2C3 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.57■□□□□ 0.24
DEPDC4Q8N2C3 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
DEPDC4Q8N2C3 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
DEPDC4Q8N2C3 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
DEPDC4Q8N2C3 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC16.56■□□□□ 0.24
DEPDC4Q8N2C3 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
DEPDC4Q8N2C3 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
DEPDC4Q8N2C3 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
DEPDC4Q8N2C3 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
DEPDC4Q8N2C3 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
DEPDC4Q8N2C3 AC022211.2-201ENST00000585075 2527 ntBASIC16.56■□□□□ 0.24
DEPDC4Q8N2C3 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
DEPDC4Q8N2C3 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC16.56■□□□□ 0.24
DEPDC4Q8N2C3 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
DEPDC4Q8N2C3 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
DEPDC4Q8N2C3 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
DEPDC4Q8N2C3 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
DEPDC4Q8N2C3 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
DEPDC4Q8N2C3 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
DEPDC4Q8N2C3 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC16.56■□□□□ 0.24
DEPDC4Q8N2C3 HMGA1P5-201ENST00000412453 271 ntBASIC16.56■□□□□ 0.24
DEPDC4Q8N2C3 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC16.56■□□□□ 0.24
DEPDC4Q8N2C3 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
DEPDC4Q8N2C3 AL049597.2-201ENST00000565575 961 ntBASIC16.56■□□□□ 0.24
DEPDC4Q8N2C3 RN7SL850P-201ENST00000579959 291 ntBASIC16.56■□□□□ 0.24
DEPDC4Q8N2C3 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC16.56■□□□□ 0.24
DEPDC4Q8N2C3 AC010653.2-201ENST00000623505 997 ntBASIC16.56■□□□□ 0.24
DEPDC4Q8N2C3 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
DEPDC4Q8N2C3 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
DEPDC4Q8N2C3 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
DEPDC4Q8N2C3 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
DEPDC4Q8N2C3 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
DEPDC4Q8N2C3 NF2-208ENST00000403435 2568 ntTSL 5 BASIC16.56■□□□□ 0.24
DEPDC4Q8N2C3 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
DEPDC4Q8N2C3 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
DEPDC4Q8N2C3 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC16.56■□□□□ 0.24
DEPDC4Q8N2C3 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC16.56■□□□□ 0.24
DEPDC4Q8N2C3 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
DEPDC4Q8N2C3 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
DEPDC4Q8N2C3 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
DEPDC4Q8N2C3 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
DEPDC4Q8N2C3 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
DEPDC4Q8N2C3 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC16.55■□□□□ 0.24
DEPDC4Q8N2C3 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
DEPDC4Q8N2C3 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
DEPDC4Q8N2C3 SP100-208ENST00000427101 1922 ntTSL 2 BASIC16.55■□□□□ 0.24
DEPDC4Q8N2C3 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
DEPDC4Q8N2C3 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
DEPDC4Q8N2C3 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC16.55■□□□□ 0.24
DEPDC4Q8N2C3 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
DEPDC4Q8N2C3 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
DEPDC4Q8N2C3 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
DEPDC4Q8N2C3 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC16.55■□□□□ 0.24
DEPDC4Q8N2C3 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC16.55■□□□□ 0.24
DEPDC4Q8N2C3 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC16.55■□□□□ 0.24
DEPDC4Q8N2C3 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC16.55■□□□□ 0.24
DEPDC4Q8N2C3 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
DEPDC4Q8N2C3 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
DEPDC4Q8N2C3 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
DEPDC4Q8N2C3 AC011676.5-201ENST00000624864 2660 ntBASIC16.55■□□□□ 0.24
DEPDC4Q8N2C3 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
DEPDC4Q8N2C3 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
DEPDC4Q8N2C3 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
DEPDC4Q8N2C3 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
DEPDC4Q8N2C3 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.55■□□□□ 0.24
DEPDC4Q8N2C3 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
DEPDC4Q8N2C3 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
DEPDC4Q8N2C3 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
DEPDC4Q8N2C3 AC009102.3-201ENST00000623118 1491 ntBASIC16.54■□□□□ 0.24
DEPDC4Q8N2C3 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
DEPDC4Q8N2C3 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
DEPDC4Q8N2C3 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
DEPDC4Q8N2C3 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
DEPDC4Q8N2C3 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
DEPDC4Q8N2C3 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
DEPDC4Q8N2C3 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
DEPDC4Q8N2C3 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
DEPDC4Q8N2C3 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms