Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC65Q8IXS2 IER3-202ENST00000376377 1350 ntBASIC19.72■□□□□ 0.75
CCDC65Q8IXS2 TBC1D3P5-201ENST00000579401 1545 ntBASIC19.72■□□□□ 0.75
CCDC65Q8IXS2 AC133963.1-201ENST00000504166 1679 ntBASIC19.72■□□□□ 0.75
CCDC65Q8IXS2 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC19.72■□□□□ 0.75
CCDC65Q8IXS2 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC19.72■□□□□ 0.75
CCDC65Q8IXS2 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
CCDC65Q8IXS2 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC65Q8IXS2 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC65Q8IXS2 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC65Q8IXS2 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC65Q8IXS2 CHCHD2P8-201ENST00000429873 447 ntBASIC19.72■□□□□ 0.75
CCDC65Q8IXS2 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC19.72■□□□□ 0.75
CCDC65Q8IXS2 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC19.72■□□□□ 0.75
CCDC65Q8IXS2 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
CCDC65Q8IXS2 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC19.72■□□□□ 0.75
CCDC65Q8IXS2 AC011840.4-201ENST00000578471 627 ntBASIC19.72■□□□□ 0.75
CCDC65Q8IXS2 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
CCDC65Q8IXS2 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC19.72■□□□□ 0.75
CCDC65Q8IXS2 LINC01451-201ENST00000623792 534 ntBASIC19.72■□□□□ 0.75
CCDC65Q8IXS2 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC65Q8IXS2 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
CCDC65Q8IXS2 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
CCDC65Q8IXS2 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC65Q8IXS2 AC097374.2-201ENST00000618617 1306 ntBASIC19.72■□□□□ 0.75
CCDC65Q8IXS2 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CCDC65Q8IXS2 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC19.72■□□□□ 0.75
CCDC65Q8IXS2 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC19.72■□□□□ 0.75
CCDC65Q8IXS2 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC65Q8IXS2 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC65Q8IXS2 AC016734.2-201ENST00000624325 1377 ntBASIC19.71■□□□□ 0.75
CCDC65Q8IXS2 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC19.71■□□□□ 0.75
CCDC65Q8IXS2 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC65Q8IXS2 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC65Q8IXS2 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC65Q8IXS2 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC65Q8IXS2 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC65Q8IXS2 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC65Q8IXS2 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC65Q8IXS2 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC19.71■□□□□ 0.75
CCDC65Q8IXS2 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
CCDC65Q8IXS2 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
CCDC65Q8IXS2 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC65Q8IXS2 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
CCDC65Q8IXS2 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC65Q8IXS2 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC65Q8IXS2 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC65Q8IXS2 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC19.71■□□□□ 0.75
CCDC65Q8IXS2 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC19.71■□□□□ 0.75
CCDC65Q8IXS2 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC65Q8IXS2 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
CCDC65Q8IXS2 AL353801.3-201ENST00000609898 542 ntBASIC19.71■□□□□ 0.75
CCDC65Q8IXS2 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC65Q8IXS2 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
CCDC65Q8IXS2 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC65Q8IXS2 LINC00304-203ENST00000565008 1864 ntBASIC19.71■□□□□ 0.75
CCDC65Q8IXS2 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
CCDC65Q8IXS2 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC65Q8IXS2 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
CCDC65Q8IXS2 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
CCDC65Q8IXS2 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC65Q8IXS2 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC65Q8IXS2 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
CCDC65Q8IXS2 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC65Q8IXS2 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC19.7■□□□□ 0.74
CCDC65Q8IXS2 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC65Q8IXS2 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC65Q8IXS2 AP000550.4-202ENST00000639755 178 ntBASIC19.7■□□□□ 0.74
CCDC65Q8IXS2 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC65Q8IXS2 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC65Q8IXS2 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC19.7■□□□□ 0.74
CCDC65Q8IXS2 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC19.7■□□□□ 0.74
CCDC65Q8IXS2 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC19.7■□□□□ 0.74
CCDC65Q8IXS2 REXO1L11P-201ENST00000620964 1927 ntBASIC19.7■□□□□ 0.74
CCDC65Q8IXS2 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC19.7■□□□□ 0.74
CCDC65Q8IXS2 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC65Q8IXS2 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC65Q8IXS2 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC19.7■□□□□ 0.74
CCDC65Q8IXS2 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC65Q8IXS2 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CCDC65Q8IXS2 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC65Q8IXS2 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC65Q8IXS2 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC65Q8IXS2 HLA-J-201ENST00000462773 1622 ntBASIC19.69■□□□□ 0.74
CCDC65Q8IXS2 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC65Q8IXS2 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC65Q8IXS2 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC65Q8IXS2 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC65Q8IXS2 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC65Q8IXS2 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC65Q8IXS2 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC65Q8IXS2 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC65Q8IXS2 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC65Q8IXS2 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC65Q8IXS2 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC65Q8IXS2 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC65Q8IXS2 ARMC10P1-201ENST00000313754 855 ntBASIC19.69■□□□□ 0.74
CCDC65Q8IXS2 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC19.69■□□□□ 0.74
CCDC65Q8IXS2 MIR1224-201ENST00000408193 85 ntBASIC19.69■□□□□ 0.74
CCDC65Q8IXS2 TSSC2-201ENST00000450217 709 ntBASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms