Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC88AQ3V6T2 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC88AQ3V6T2 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
CCDC88AQ3V6T2 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC88AQ3V6T2 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC88AQ3V6T2 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC88AQ3V6T2 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC21.54■■□□□ 1.04
CCDC88AQ3V6T2 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC88AQ3V6T2 AC098818.2-201ENST00000564925 2320 ntBASIC21.54■■□□□ 1.04
CCDC88AQ3V6T2 PMS2P4-201ENST00000412466 1052 ntBASIC21.54■■□□□ 1.04
CCDC88AQ3V6T2 KRT18P32-201ENST00000424695 1287 ntBASIC21.54■■□□□ 1.04
CCDC88AQ3V6T2 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC21.54■■□□□ 1.04
CCDC88AQ3V6T2 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC21.54■■□□□ 1.04
CCDC88AQ3V6T2 AQP6-203ENST00000551733 849 ntTSL 3 BASIC21.54■■□□□ 1.04
CCDC88AQ3V6T2 DUX4L17-201ENST00000557360 1267 ntBASIC21.54■■□□□ 1.04
CCDC88AQ3V6T2 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC21.54■■□□□ 1.04
CCDC88AQ3V6T2 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC88AQ3V6T2 AC007064.4-201ENST00000637740 555 ntBASIC21.54■■□□□ 1.04
CCDC88AQ3V6T2 BCAR1-209ENST00000546196 1340 ntBASIC21.54■■□□□ 1.04
CCDC88AQ3V6T2 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC88AQ3V6T2 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC88AQ3V6T2 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC88AQ3V6T2 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC88AQ3V6T2 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC88AQ3V6T2 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC88AQ3V6T2 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC88AQ3V6T2 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
CCDC88AQ3V6T2 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC88AQ3V6T2 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
CCDC88AQ3V6T2 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC21.54■■□□□ 1.04
CCDC88AQ3V6T2 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
CCDC88AQ3V6T2 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC88AQ3V6T2 METTL26-204ENST00000397665 558 ntTSL 2 BASIC21.54■■□□□ 1.04
CCDC88AQ3V6T2 AC236430.1-201ENST00000402231 743 ntBASIC21.54■■□□□ 1.04
CCDC88AQ3V6T2 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC21.54■■□□□ 1.04
CCDC88AQ3V6T2 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC21.54■■□□□ 1.04
CCDC88AQ3V6T2 AC093520.2-201ENST00000561830 333 ntBASIC21.54■■□□□ 1.04
CCDC88AQ3V6T2 AL390955.2-201ENST00000603032 514 ntBASIC21.54■■□□□ 1.04
CCDC88AQ3V6T2 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
CCDC88AQ3V6T2 MED16-214ENST00000617672 554 ntTSL 5 BASIC21.54■■□□□ 1.04
CCDC88AQ3V6T2 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC21.54■■□□□ 1.04
CCDC88AQ3V6T2 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC21.54■■□□□ 1.04
CCDC88AQ3V6T2 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CCDC88AQ3V6T2 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC88AQ3V6T2 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC88AQ3V6T2 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC21.53■■□□□ 1.04
CCDC88AQ3V6T2 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC21.53■■□□□ 1.04
CCDC88AQ3V6T2 REM2-202ENST00000536884 1331 ntTSL 2 BASIC21.53■■□□□ 1.04
CCDC88AQ3V6T2 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC88AQ3V6T2 AC093677.2-201ENST00000600169 1863 ntBASIC21.53■■□□□ 1.04
CCDC88AQ3V6T2 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC88AQ3V6T2 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC21.53■■□□□ 1.04
CCDC88AQ3V6T2 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC88AQ3V6T2 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC88AQ3V6T2 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC88AQ3V6T2 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC88AQ3V6T2 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC88AQ3V6T2 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC88AQ3V6T2 AC015922.1-201ENST00000421102 1152 ntBASIC21.53■■□□□ 1.04
CCDC88AQ3V6T2 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC21.53■■□□□ 1.04
CCDC88AQ3V6T2 AC005034.1-201ENST00000426657 489 ntBASIC21.53■■□□□ 1.04
CCDC88AQ3V6T2 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC21.53■■□□□ 1.04
CCDC88AQ3V6T2 ACTG1P14-201ENST00000446382 1122 ntBASIC21.53■■□□□ 1.04
CCDC88AQ3V6T2 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC88AQ3V6T2 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
CCDC88AQ3V6T2 IGHV3OR16-6-201ENST00000568775 360 ntBASIC21.53■■□□□ 1.04
CCDC88AQ3V6T2 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC21.53■■□□□ 1.04
CCDC88AQ3V6T2 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
CCDC88AQ3V6T2 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC88AQ3V6T2 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC88AQ3V6T2 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC88AQ3V6T2 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
CCDC88AQ3V6T2 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC21.53■■□□□ 1.04
CCDC88AQ3V6T2 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC21.52■■□□□ 1.04
CCDC88AQ3V6T2 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC88AQ3V6T2 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC88AQ3V6T2 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
CCDC88AQ3V6T2 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
CCDC88AQ3V6T2 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC21.52■■□□□ 1.04
CCDC88AQ3V6T2 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
CCDC88AQ3V6T2 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC88AQ3V6T2 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC21.52■■□□□ 1.04
CCDC88AQ3V6T2 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC21.52■■□□□ 1.04
CCDC88AQ3V6T2 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC21.52■■□□□ 1.04
CCDC88AQ3V6T2 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC21.52■■□□□ 1.04
CCDC88AQ3V6T2 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC21.52■■□□□ 1.04
CCDC88AQ3V6T2 AQP6-205ENST00000618286 829 ntTSL 5 BASIC21.52■■□□□ 1.04
CCDC88AQ3V6T2 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC88AQ3V6T2 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC21.52■■□□□ 1.04
CCDC88AQ3V6T2 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC88AQ3V6T2 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC21.52■■□□□ 1.04
CCDC88AQ3V6T2 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC88AQ3V6T2 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC88AQ3V6T2 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC88AQ3V6T2 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
CCDC88AQ3V6T2 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC88AQ3V6T2 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC21.52■■□□□ 1.04
CCDC88AQ3V6T2 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CCDC88AQ3V6T2 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC21.52■■□□□ 1.03
CCDC88AQ3V6T2 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC21.52■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms