Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SF3A1Q15459 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SF3A1Q15459 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC20.53■□□□□ 0.88
SF3A1Q15459 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SF3A1Q15459 PP12613-201ENST00000424958 2230 ntBASIC20.53■□□□□ 0.88
SF3A1Q15459 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
SF3A1Q15459 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC20.53■□□□□ 0.88
SF3A1Q15459 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SF3A1Q15459 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC20.53■□□□□ 0.88
SF3A1Q15459 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
SF3A1Q15459 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
SF3A1Q15459 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SF3A1Q15459 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC20.53■□□□□ 0.88
SF3A1Q15459 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SF3A1Q15459 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SF3A1Q15459 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
SF3A1Q15459 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
SF3A1Q15459 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SF3A1Q15459 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
SF3A1Q15459 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SF3A1Q15459 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SF3A1Q15459 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SF3A1Q15459 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SF3A1Q15459 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SF3A1Q15459 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SF3A1Q15459 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SF3A1Q15459 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SF3A1Q15459 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SF3A1Q15459 KRT89P-201ENST00000620027 1478 ntBASIC20.52■□□□□ 0.88
SF3A1Q15459 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SF3A1Q15459 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
SF3A1Q15459 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC20.52■□□□□ 0.88
SF3A1Q15459 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SF3A1Q15459 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC20.52■□□□□ 0.88
SF3A1Q15459 STARP1-201ENST00000397973 869 ntBASIC20.52■□□□□ 0.88
SF3A1Q15459 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC20.52■□□□□ 0.88
SF3A1Q15459 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC20.52■□□□□ 0.88
SF3A1Q15459 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SF3A1Q15459 TEN1-204ENST00000588202 862 ntTSL 3 BASIC20.52■□□□□ 0.88
SF3A1Q15459 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
SF3A1Q15459 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC20.52■□□□□ 0.88
SF3A1Q15459 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC20.52■□□□□ 0.88
SF3A1Q15459 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SF3A1Q15459 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SF3A1Q15459 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SF3A1Q15459 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SF3A1Q15459 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC20.52■□□□□ 0.88
SF3A1Q15459 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SF3A1Q15459 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
SF3A1Q15459 AC141586.5-201ENST00000624546 2050 ntBASIC20.52■□□□□ 0.87
SF3A1Q15459 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC20.52■□□□□ 0.87
SF3A1Q15459 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SF3A1Q15459 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
SF3A1Q15459 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SF3A1Q15459 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SF3A1Q15459 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC20.51■□□□□ 0.87
SF3A1Q15459 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
SF3A1Q15459 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SF3A1Q15459 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SF3A1Q15459 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SF3A1Q15459 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC20.51■□□□□ 0.87
SF3A1Q15459 AL645608.8-201ENST00000606034 2086 ntBASIC20.51■□□□□ 0.87
SF3A1Q15459 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SF3A1Q15459 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SF3A1Q15459 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
SF3A1Q15459 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC20.51■□□□□ 0.87
SF3A1Q15459 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SF3A1Q15459 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SF3A1Q15459 AC211429.1-201ENST00000415277 523 ntBASIC20.51■□□□□ 0.87
SF3A1Q15459 HLA-F-220ENST00000434407 884 ntBASIC20.51■□□□□ 0.87
SF3A1Q15459 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC20.51■□□□□ 0.87
SF3A1Q15459 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SF3A1Q15459 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
SF3A1Q15459 AC092597.1-201ENST00000487352 616 ntBASIC20.51■□□□□ 0.87
SF3A1Q15459 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC20.51■□□□□ 0.87
SF3A1Q15459 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC20.51■□□□□ 0.87
SF3A1Q15459 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC20.51■□□□□ 0.87
SF3A1Q15459 TK2-213ENST00000563369 882 ntTSL 5 BASIC20.51■□□□□ 0.87
SF3A1Q15459 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC20.51■□□□□ 0.87
SF3A1Q15459 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
SF3A1Q15459 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC20.51■□□□□ 0.87
SF3A1Q15459 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC20.51■□□□□ 0.87
SF3A1Q15459 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SF3A1Q15459 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SF3A1Q15459 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
SF3A1Q15459 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC20.51■□□□□ 0.87
SF3A1Q15459 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
SF3A1Q15459 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC20.51■□□□□ 0.87
SF3A1Q15459 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC20.5■□□□□ 0.87
SF3A1Q15459 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC20.5■□□□□ 0.87
SF3A1Q15459 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
SF3A1Q15459 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SF3A1Q15459 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SF3A1Q15459 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SF3A1Q15459 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SF3A1Q15459 KRT18P57-201ENST00000443599 1254 ntBASIC20.5■□□□□ 0.87
SF3A1Q15459 SNX5-210ENST00000481323 562 ntTSL 3 BASIC20.5■□□□□ 0.87
SF3A1Q15459 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SF3A1Q15459 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC20.5■□□□□ 0.87
SF3A1Q15459 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms