Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
MSH6P52701 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC24.41■■□□□ 1.5
MSH6P52701 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
MSH6P52701 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC24.41■■□□□ 1.5
MSH6P52701 KLF2P3-201ENST00000451977 1087 ntBASIC24.41■■□□□ 1.5
MSH6P52701 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC24.41■■□□□ 1.5
MSH6P52701 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC24.41■■□□□ 1.5
MSH6P52701 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
MSH6P52701 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
MSH6P52701 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC24.4■■□□□ 1.5
MSH6P52701 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
MSH6P52701 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC24.4■■□□□ 1.5
MSH6P52701 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC24.4■■□□□ 1.5
MSH6P52701 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
MSH6P52701 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
MSH6P52701 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC24.4■■□□□ 1.5
MSH6P52701 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC24.4■■□□□ 1.5
MSH6P52701 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC24.4■■□□□ 1.5
MSH6P52701 AC005237.2-201ENST00000434368 219 ntBASIC24.4■■□□□ 1.5
MSH6P52701 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
MSH6P52701 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC24.4■■□□□ 1.5
MSH6P52701 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC24.4■■□□□ 1.5
MSH6P52701 AL512356.2-201ENST00000546955 174 ntBASIC24.4■■□□□ 1.5
MSH6P52701 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
MSH6P52701 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC24.4■■□□□ 1.5
MSH6P52701 AL161938.1-201ENST00000569833 2180 ntBASIC24.4■■□□□ 1.5
MSH6P52701 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC24.4■■□□□ 1.5
MSH6P52701 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
MSH6P52701 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
MSH6P52701 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC24.39■■□□□ 1.5
MSH6P52701 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.49
MSH6P52701 AL049812.1-201ENST00000432563 2267 ntBASIC24.39■■□□□ 1.49
MSH6P52701 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC24.39■■□□□ 1.49
MSH6P52701 AC069335.1-201ENST00000489972 472 ntBASIC24.39■■□□□ 1.49
MSH6P52701 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC24.39■■□□□ 1.49
MSH6P52701 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
MSH6P52701 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC24.39■■□□□ 1.49
MSH6P52701 AL359881.2-201ENST00000602973 570 ntBASIC24.39■■□□□ 1.49
MSH6P52701 SERF2-217ENST00000630046 862 ntTSL 5 BASIC24.39■■□□□ 1.49
MSH6P52701 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
MSH6P52701 TUBB3P1-201ENST00000405796 1332 ntBASIC24.39■■□□□ 1.49
MSH6P52701 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
MSH6P52701 AC097637.2-201ENST00000624096 1997 ntBASIC24.38■■□□□ 1.49
MSH6P52701 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
MSH6P52701 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC24.38■■□□□ 1.49
MSH6P52701 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC24.38■■□□□ 1.49
MSH6P52701 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC24.38■■□□□ 1.49
MSH6P52701 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC24.38■■□□□ 1.49
MSH6P52701 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
MSH6P52701 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC24.38■■□□□ 1.49
MSH6P52701 AC107890.1-201ENST00000422478 521 ntBASIC24.38■■□□□ 1.49
MSH6P52701 KRT8P48-201ENST00000515599 1220 ntBASIC24.38■■□□□ 1.49
MSH6P52701 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC24.38■■□□□ 1.49
MSH6P52701 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC24.38■■□□□ 1.49
MSH6P52701 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC24.38■■□□□ 1.49
MSH6P52701 AC019129.2-201ENST00000609837 1235 ntBASIC24.38■■□□□ 1.49
MSH6P52701 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC24.38■■□□□ 1.49
MSH6P52701 AP001059.3-201ENST00000619053 235 ntBASIC24.38■■□□□ 1.49
MSH6P52701 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
MSH6P52701 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC24.38■■□□□ 1.49
MSH6P52701 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
MSH6P52701 AC018445.3-201ENST00000624177 1945 ntBASIC24.38■■□□□ 1.49
MSH6P52701 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
MSH6P52701 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC24.38■■□□□ 1.49
MSH6P52701 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC24.38■■□□□ 1.49
MSH6P52701 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC24.38■■□□□ 1.49
MSH6P52701 GMCL1P1-201ENST00000463439 1581 ntBASIC24.37■■□□□ 1.49
MSH6P52701 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC24.37■■□□□ 1.49
MSH6P52701 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
MSH6P52701 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
MSH6P52701 COBL-210ENST00000632460 1941 ntTSL 5 BASIC24.37■■□□□ 1.49
MSH6P52701 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
MSH6P52701 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
MSH6P52701 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
MSH6P52701 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
MSH6P52701 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC24.37■■□□□ 1.49
MSH6P52701 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
MSH6P52701 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
MSH6P52701 AC002056.1-201ENST00000395613 760 ntBASIC24.37■■□□□ 1.49
MSH6P52701 RAC2-204ENST00000406508 893 ntTSL 5 BASIC24.37■■□□□ 1.49
MSH6P52701 KRT18P32-201ENST00000424695 1287 ntBASIC24.37■■□□□ 1.49
MSH6P52701 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC24.37■■□□□ 1.49
MSH6P52701 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC24.37■■□□□ 1.49
MSH6P52701 CRB3P1-201ENST00000449338 276 ntBASIC24.37■■□□□ 1.49
MSH6P52701 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
MSH6P52701 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC24.37■■□□□ 1.49
MSH6P52701 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC24.37■■□□□ 1.49
MSH6P52701 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC24.37■■□□□ 1.49
MSH6P52701 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
MSH6P52701 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC24.36■■□□□ 1.49
MSH6P52701 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC24.36■■□□□ 1.49
MSH6P52701 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC24.36■■□□□ 1.49
MSH6P52701 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC24.36■■□□□ 1.49
MSH6P52701 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC24.36■■□□□ 1.49
MSH6P52701 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
MSH6P52701 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
MSH6P52701 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
MSH6P52701 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC24.36■■□□□ 1.49
MSH6P52701 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
MSH6P52701 FALEC-201ENST00000416894 566 ntTSL 3 BASIC24.36■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms