Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.4■□□□□ 0.38
SHMT2P34897 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
SHMT2P34897 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
SHMT2P34897 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
SHMT2P34897 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
SHMT2P34897 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SHMT2P34897 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SHMT2P34897 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
SHMT2P34897 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SHMT2P34897 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.39■□□□□ 0.37
SHMT2P34897 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.39■□□□□ 0.37
SHMT2P34897 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SHMT2P34897 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.39■□□□□ 0.37
SHMT2P34897 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.39■□□□□ 0.37
SHMT2P34897 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
SHMT2P34897 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SHMT2P34897 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC17.39■□□□□ 0.37
SHMT2P34897 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC17.39■□□□□ 0.37
SHMT2P34897 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC17.39■□□□□ 0.37
SHMT2P34897 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SHMT2P34897 AL845331.1-201ENST00000424978 1190 ntBASIC17.39■□□□□ 0.37
SHMT2P34897 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
SHMT2P34897 KRT17P6-201ENST00000453795 1220 ntBASIC17.39■□□□□ 0.37
SHMT2P34897 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
SHMT2P34897 AC074051.2-201ENST00000565115 352 ntBASIC17.39■□□□□ 0.37
SHMT2P34897 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SHMT2P34897 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
SHMT2P34897 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SHMT2P34897 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
SHMT2P34897 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC17.39■□□□□ 0.37
SHMT2P34897 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SHMT2P34897 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SHMT2P34897 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC17.39■□□□□ 0.37
SHMT2P34897 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SHMT2P34897 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SHMT2P34897 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SHMT2P34897 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC17.39■□□□□ 0.37
SHMT2P34897 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
SHMT2P34897 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHMT2P34897 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SHMT2P34897 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHMT2P34897 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.38■□□□□ 0.37
SHMT2P34897 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SHMT2P34897 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.38■□□□□ 0.37
SHMT2P34897 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.38■□□□□ 0.37
SHMT2P34897 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.38■□□□□ 0.37
SHMT2P34897 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.38■□□□□ 0.37
SHMT2P34897 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHMT2P34897 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.38■□□□□ 0.37
SHMT2P34897 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHMT2P34897 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC17.38■□□□□ 0.37
SHMT2P34897 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHMT2P34897 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHMT2P34897 REXO1L9P-201ENST00000604264 2108 ntBASIC17.38■□□□□ 0.37
SHMT2P34897 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHMT2P34897 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.38■□□□□ 0.37
SHMT2P34897 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
SHMT2P34897 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHMT2P34897 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHMT2P34897 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
SHMT2P34897 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHMT2P34897 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHMT2P34897 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHMT2P34897 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHMT2P34897 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SHMT2P34897 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
SHMT2P34897 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHMT2P34897 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC17.38■□□□□ 0.37
SHMT2P34897 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC17.38■□□□□ 0.37
SHMT2P34897 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.38■□□□□ 0.37
SHMT2P34897 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC17.38■□□□□ 0.37
SHMT2P34897 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC17.38■□□□□ 0.37
SHMT2P34897 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
SHMT2P34897 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
SHMT2P34897 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
SHMT2P34897 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
SHMT2P34897 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHMT2P34897 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SHMT2P34897 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SHMT2P34897 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHMT2P34897 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC17.38■□□□□ 0.37
SHMT2P34897 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SHMT2P34897 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHMT2P34897 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHMT2P34897 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHMT2P34897 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHMT2P34897 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHMT2P34897 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SHMT2P34897 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHMT2P34897 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHMT2P34897 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHMT2P34897 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHMT2P34897 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.37■□□□□ 0.37
SHMT2P34897 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHMT2P34897 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHMT2P34897 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC17.37■□□□□ 0.37
SHMT2P34897 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHMT2P34897 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
SHMT2P34897 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC17.37■□□□□ 0.37
SHMT2P34897 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms