Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
HMGA1P17096 ABALON-201ENST00000629058 1903 ntBASIC18.34■□□□□ 0.53
HMGA1P17096 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC18.34■□□□□ 0.53
HMGA1P17096 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC18.34■□□□□ 0.53
HMGA1P17096 ELK2BP-201ENST00000415014 1224 ntBASIC18.34■□□□□ 0.53
HMGA1P17096 MED15P5-201ENST00000423150 992 ntBASIC18.34■□□□□ 0.53
HMGA1P17096 AC005104.2-201ENST00000427818 678 ntBASIC18.34■□□□□ 0.53
HMGA1P17096 COX10-202ENST00000429152 875 ntTSL 2 BASIC18.34■□□□□ 0.53
HMGA1P17096 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC18.34■□□□□ 0.53
HMGA1P17096 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC18.34■□□□□ 0.53
HMGA1P17096 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC18.34■□□□□ 0.53
HMGA1P17096 AL591424.1-201ENST00000442569 1213 ntBASIC18.34■□□□□ 0.53
HMGA1P17096 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC18.34■□□□□ 0.53
HMGA1P17096 ARTN-206ENST00000472435 402 ntTSL 3 BASIC18.34■□□□□ 0.53
HMGA1P17096 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HMGA1P17096 STK19B-204ENST00000512515 211 ntBASIC18.34■□□□□ 0.53
HMGA1P17096 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC18.34■□□□□ 0.53
HMGA1P17096 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC18.34■□□□□ 0.53
HMGA1P17096 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGA1P17096 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC18.34■□□□□ 0.53
HMGA1P17096 MIR1199-201ENST00000621445 119 ntBASIC18.34■□□□□ 0.53
HMGA1P17096 PGM5P2-202ENST00000637225 1043 ntBASIC18.34■□□□□ 0.53
HMGA1P17096 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC18.34■□□□□ 0.53
HMGA1P17096 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HMGA1P17096 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGA1P17096 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC18.34■□□□□ 0.53
HMGA1P17096 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGA1P17096 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGA1P17096 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGA1P17096 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGA1P17096 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC18.34■□□□□ 0.53
HMGA1P17096 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC18.34■□□□□ 0.53
HMGA1P17096 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.34■□□□□ 0.53
HMGA1P17096 AC009336.1-201ENST00000608941 1553 ntBASIC18.34■□□□□ 0.53
HMGA1P17096 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC18.34■□□□□ 0.53
HMGA1P17096 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HMGA1P17096 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
HMGA1P17096 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
HMGA1P17096 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
HMGA1P17096 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.53
HMGA1P17096 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
HMGA1P17096 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC18.33■□□□□ 0.53
HMGA1P17096 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
HMGA1P17096 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC18.33■□□□□ 0.53
HMGA1P17096 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGA1P17096 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGA1P17096 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
HMGA1P17096 KRT18P13-201ENST00000400056 1290 ntBASIC18.33■□□□□ 0.52
HMGA1P17096 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC18.33■□□□□ 0.52
HMGA1P17096 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC18.33■□□□□ 0.52
HMGA1P17096 NMU-202ENST00000505262 693 ntTSL 3 BASIC18.33■□□□□ 0.52
HMGA1P17096 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC18.33■□□□□ 0.52
HMGA1P17096 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC18.33■□□□□ 0.52
HMGA1P17096 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC18.33■□□□□ 0.52
HMGA1P17096 AL139424.1-201ENST00000607572 797 ntBASIC18.33■□□□□ 0.52
HMGA1P17096 AC005593.1-201ENST00000624894 515 ntBASIC18.33■□□□□ 0.52
HMGA1P17096 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC18.33■□□□□ 0.52
HMGA1P17096 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.33■□□□□ 0.52
HMGA1P17096 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGA1P17096 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18.33■□□□□ 0.52
HMGA1P17096 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGA1P17096 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.52
HMGA1P17096 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGA1P17096 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGA1P17096 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HMGA1P17096 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.33■□□□□ 0.52
HMGA1P17096 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC18.32■□□□□ 0.52
HMGA1P17096 NCF1C-201ENST00000438382 1427 ntBASIC18.32■□□□□ 0.52
HMGA1P17096 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
HMGA1P17096 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
HMGA1P17096 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HMGA1P17096 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HMGA1P17096 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC18.32■□□□□ 0.52
HMGA1P17096 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HMGA1P17096 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC18.32■□□□□ 0.52
HMGA1P17096 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC18.32■□□□□ 0.52
HMGA1P17096 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HMGA1P17096 KRT18P3-201ENST00000451602 1288 ntBASIC18.32■□□□□ 0.52
HMGA1P17096 S100A2-206ENST00000497140 697 ntTSL 2 BASIC18.32■□□□□ 0.52
HMGA1P17096 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC18.32■□□□□ 0.52
HMGA1P17096 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC18.32■□□□□ 0.52
HMGA1P17096 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC18.32■□□□□ 0.52
HMGA1P17096 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
HMGA1P17096 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC18.32■□□□□ 0.52
HMGA1P17096 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC18.32■□□□□ 0.52
HMGA1P17096 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC18.32■□□□□ 0.52
HMGA1P17096 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
HMGA1P17096 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
HMGA1P17096 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
HMGA1P17096 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
HMGA1P17096 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HMGA1P17096 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HMGA1P17096 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
HMGA1P17096 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
HMGA1P17096 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGA1P17096 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGA1P17096 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.31■□□□□ 0.52
HMGA1P17096 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGA1P17096 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
HMGA1P17096 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms