Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 BX842568.4-201ENST00000421222 227 ntBASIC18.03■□□□□ 0.48
HOXC11O43248 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC18.03■□□□□ 0.48
HOXC11O43248 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC18.03■□□□□ 0.48
HOXC11O43248 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC18.03■□□□□ 0.48
HOXC11O43248 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC18.03■□□□□ 0.48
HOXC11O43248 COPE-211ENST00000600932 1144 ntTSL 5 BASIC18.03■□□□□ 0.48
HOXC11O43248 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HOXC11O43248 AC139530.3-201ENST00000620344 690 ntBASIC18.03■□□□□ 0.48
HOXC11O43248 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
HOXC11O43248 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC18.03■□□□□ 0.48
HOXC11O43248 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.03■□□□□ 0.48
HOXC11O43248 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HOXC11O43248 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC18.03■□□□□ 0.48
HOXC11O43248 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC18.03■□□□□ 0.48
HOXC11O43248 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.03■□□□□ 0.48
HOXC11O43248 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC18.03■□□□□ 0.48
HOXC11O43248 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
HOXC11O43248 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HOXC11O43248 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.03■□□□□ 0.48
HOXC11O43248 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HOXC11O43248 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HOXC11O43248 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HOXC11O43248 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC18.02■□□□□ 0.48
HOXC11O43248 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HOXC11O43248 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.02■□□□□ 0.48
HOXC11O43248 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.02■□□□□ 0.48
HOXC11O43248 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HOXC11O43248 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
HOXC11O43248 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
HOXC11O43248 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HOXC11O43248 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC18.02■□□□□ 0.48
HOXC11O43248 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HOXC11O43248 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HOXC11O43248 AC009947.1-201ENST00000444350 727 ntBASIC18.02■□□□□ 0.48
HOXC11O43248 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC18.02■□□□□ 0.48
HOXC11O43248 AC136632.2-201ENST00000512891 861 ntBASIC18.02■□□□□ 0.48
HOXC11O43248 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HOXC11O43248 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.48
HOXC11O43248 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HOXC11O43248 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC18.02■□□□□ 0.48
HOXC11O43248 AC005593.1-201ENST00000624894 515 ntBASIC18.02■□□□□ 0.48
HOXC11O43248 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
HOXC11O43248 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HOXC11O43248 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
HOXC11O43248 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
HOXC11O43248 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
HOXC11O43248 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC18.02■□□□□ 0.47
HOXC11O43248 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC18.02■□□□□ 0.47
HOXC11O43248 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.02■□□□□ 0.47
HOXC11O43248 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
HOXC11O43248 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
HOXC11O43248 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HOXC11O43248 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HOXC11O43248 AC148477.5-201ENST00000625164 1645 ntBASIC18.01■□□□□ 0.47
HOXC11O43248 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HOXC11O43248 AC005332.8-201ENST00000622750 2735 ntBASIC18.01■□□□□ 0.47
HOXC11O43248 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.01■□□□□ 0.47
HOXC11O43248 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
HOXC11O43248 REXO1L9P-201ENST00000604264 2108 ntBASIC18.01■□□□□ 0.47
HOXC11O43248 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
HOXC11O43248 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC18.01■□□□□ 0.47
HOXC11O43248 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HOXC11O43248 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HOXC11O43248 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HOXC11O43248 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HOXC11O43248 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC18.01■□□□□ 0.47
HOXC11O43248 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HOXC11O43248 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC18.01■□□□□ 0.47
HOXC11O43248 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC18.01■□□□□ 0.47
HOXC11O43248 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HOXC11O43248 AC092865.5-201ENST00000545435 363 ntBASIC18.01■□□□□ 0.47
HOXC11O43248 AC109462.3-201ENST00000573934 613 ntBASIC18.01■□□□□ 0.47
HOXC11O43248 CYB561-217ENST00000582997 877 ntTSL 5 BASIC18.01■□□□□ 0.47
HOXC11O43248 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC18.01■□□□□ 0.47
HOXC11O43248 STK25P1-201ENST00000585406 838 ntBASIC18.01■□□□□ 0.47
HOXC11O43248 AC004706.3-202ENST00000621574 984 ntBASIC18.01■□□□□ 0.47
HOXC11O43248 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.01■□□□□ 0.47
HOXC11O43248 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
HOXC11O43248 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HOXC11O43248 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HOXC11O43248 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
HOXC11O43248 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC18.01■□□□□ 0.47
HOXC11O43248 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.01■□□□□ 0.47
HOXC11O43248 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
HOXC11O43248 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HOXC11O43248 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
HOXC11O43248 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC18■□□□□ 0.47
HOXC11O43248 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC18■□□□□ 0.47
HOXC11O43248 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18■□□□□ 0.47
HOXC11O43248 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC18■□□□□ 0.47
HOXC11O43248 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC18■□□□□ 0.47
HOXC11O43248 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC18■□□□□ 0.47
HOXC11O43248 KRT18P3-201ENST00000451602 1288 ntBASIC18■□□□□ 0.47
HOXC11O43248 SIGLEC30P-201ENST00000455569 941 ntBASIC18■□□□□ 0.47
HOXC11O43248 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC18■□□□□ 0.47
HOXC11O43248 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC18■□□□□ 0.47
HOXC11O43248 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC18■□□□□ 0.47
HOXC11O43248 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18■□□□□ 0.47
HOXC11O43248 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC18■□□□□ 0.47
HOXC11O43248 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms