Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 LINC01571-201ENST00000563603 811 ntTSL 2 BASIC24.27■■□□□ 1.48
MSH5O43196 AC007066.2-202ENST00000566531 914 ntBASIC24.27■■□□□ 1.48
MSH5O43196 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC24.27■■□□□ 1.48
MSH5O43196 AC016727.1-205ENST00000605437 569 ntBASIC24.27■■□□□ 1.48
MSH5O43196 AC020658.4-201ENST00000613987 684 ntBASIC24.27■■□□□ 1.48
MSH5O43196 AC139530.3-201ENST00000620344 690 ntBASIC24.27■■□□□ 1.48
MSH5O43196 AC084018.2-201ENST00000613093 2607 ntBASIC24.27■■□□□ 1.48
MSH5O43196 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC24.26■■□□□ 1.47
MSH5O43196 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC24.26■■□□□ 1.47
MSH5O43196 AC008894.3-201ENST00000624324 3103 ntBASIC24.26■■□□□ 1.47
MSH5O43196 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
MSH5O43196 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
MSH5O43196 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC24.26■■□□□ 1.47
MSH5O43196 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
MSH5O43196 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC24.26■■□□□ 1.47
MSH5O43196 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
MSH5O43196 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
MSH5O43196 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
MSH5O43196 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
MSH5O43196 SUSD3-201ENST00000375469 1114 ntAPPRIS ALT2 TSL 5 BASIC24.26■■□□□ 1.47
MSH5O43196 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC24.26■■□□□ 1.47
MSH5O43196 ETFRF1-201ENST00000381356 1134 ntAPPRIS P2 TSL 1 (best) BASIC24.26■■□□□ 1.47
MSH5O43196 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC24.26■■□□□ 1.47
MSH5O43196 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC24.26■■□□□ 1.47
MSH5O43196 AL445072.1-201ENST00000438994 639 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
MSH5O43196 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC24.26■■□□□ 1.47
MSH5O43196 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC24.26■■□□□ 1.47
MSH5O43196 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC24.26■■□□□ 1.47
MSH5O43196 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC24.26■■□□□ 1.47
MSH5O43196 TMEM92-AS1-201ENST00000508851 750 ntTSL 3 BASIC24.26■■□□□ 1.47
MSH5O43196 AC096576.2-201ENST00000511835 948 ntTSL 3 BASIC24.26■■□□□ 1.47
MSH5O43196 NOP10-202ENST00000557912 436 ntTSL 2 BASIC24.26■■□□□ 1.47
MSH5O43196 SNORA59B-202ENST00000578183 701 ntBASIC24.26■■□□□ 1.47
MSH5O43196 E2F3P1-201ENST00000589887 1230 ntBASIC24.26■■□□□ 1.47
MSH5O43196 AC120114.3-201ENST00000611923 658 ntBASIC24.26■■□□□ 1.47
MSH5O43196 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC24.26■■□□□ 1.47
MSH5O43196 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
MSH5O43196 CBWD3-206ENST00000478048 1736 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
MSH5O43196 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
MSH5O43196 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
MSH5O43196 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
MSH5O43196 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC24.25■■□□□ 1.47
MSH5O43196 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC24.25■■□□□ 1.47
MSH5O43196 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC24.25■■□□□ 1.47
MSH5O43196 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC24.25■■□□□ 1.47
MSH5O43196 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
MSH5O43196 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
MSH5O43196 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC24.25■■□□□ 1.47
MSH5O43196 C7orf69-201ENST00000418326 675 ntTSL 4 BASIC24.25■■□□□ 1.47
MSH5O43196 TSPY22P-201ENST00000427496 604 ntBASIC24.25■■□□□ 1.47
MSH5O43196 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC24.25■■□□□ 1.47
MSH5O43196 CSTF3-203ENST00000438862 1132 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
MSH5O43196 MTND3P4-201ENST00000453537 303 ntBASIC24.25■■□□□ 1.47
MSH5O43196 AP002469.2-201ENST00000531724 424 ntBASIC24.25■■□□□ 1.47
MSH5O43196 SLC25A6P4-201ENST00000586535 553 ntBASIC24.25■■□□□ 1.47
MSH5O43196 AL023583.1-201ENST00000607518 1143 ntBASIC24.25■■□□□ 1.47
MSH5O43196 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC24.25■■□□□ 1.47
MSH5O43196 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC24.25■■□□□ 1.47
MSH5O43196 AC104820.1-201ENST00000624183 307 ntBASIC24.25■■□□□ 1.47
MSH5O43196 CIR1P2-201ENST00000514821 1342 ntBASIC24.25■■□□□ 1.47
MSH5O43196 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC24.25■■□□□ 1.47
MSH5O43196 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC24.25■■□□□ 1.47
MSH5O43196 RPAIN-202ENST00000381208 1394 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
MSH5O43196 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
MSH5O43196 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC24.25■■□□□ 1.47
MSH5O43196 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
MSH5O43196 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC24.25■■□□□ 1.47
MSH5O43196 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
MSH5O43196 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
MSH5O43196 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC24.24■■□□□ 1.47
MSH5O43196 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
MSH5O43196 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
MSH5O43196 AC011270.2-201ENST00000624293 2550 ntBASIC24.24■■□□□ 1.47
MSH5O43196 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC24.24■■□□□ 1.47
MSH5O43196 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
MSH5O43196 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC24.24■■□□□ 1.47
MSH5O43196 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
MSH5O43196 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
MSH5O43196 ACTR3C-201ENST00000252071 1218 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
MSH5O43196 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC24.24■■□□□ 1.47
MSH5O43196 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
MSH5O43196 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC24.24■■□□□ 1.47
MSH5O43196 KRT18P31-201ENST00000506277 1292 ntBASIC24.24■■□□□ 1.47
MSH5O43196 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC24.24■■□□□ 1.47
MSH5O43196 AL445222.1-201ENST00000607259 628 ntBASIC24.24■■□□□ 1.47
MSH5O43196 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
MSH5O43196 AL359742.1-201ENST00000622497 540 ntBASIC24.24■■□□□ 1.47
MSH5O43196 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC24.24■■□□□ 1.47
MSH5O43196 OR5P3-202ENST00000641167 1193 ntAPPRIS P1 BASIC24.24■■□□□ 1.47
MSH5O43196 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
MSH5O43196 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC24.24■■□□□ 1.47
MSH5O43196 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
MSH5O43196 LINC01965-201ENST00000412112 1378 ntTSL 3 BASIC24.24■■□□□ 1.47
MSH5O43196 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
MSH5O43196 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
MSH5O43196 PLSCR2-205ENST00000497985 1441 ntTSL 2 BASIC24.24■■□□□ 1.47
MSH5O43196 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC24.24■■□□□ 1.47
MSH5O43196 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC24.24■■□□□ 1.47
MSH5O43196 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
MSH5O43196 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC24.24■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms