Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SMIM28A0A1B0GU29 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SMIM28A0A1B0GU29 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SMIM28A0A1B0GU29 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC19.01■□□□□ 0.63
SMIM28A0A1B0GU29 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC19.01■□□□□ 0.63
SMIM28A0A1B0GU29 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SMIM28A0A1B0GU29 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SMIM28A0A1B0GU29 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SMIM28A0A1B0GU29 FUT8-AS1-201ENST00000621019 1521 ntBASIC19■□□□□ 0.63
SMIM28A0A1B0GU29 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SMIM28A0A1B0GU29 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SMIM28A0A1B0GU29 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC19■□□□□ 0.63
SMIM28A0A1B0GU29 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC19■□□□□ 0.63
SMIM28A0A1B0GU29 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC19■□□□□ 0.63
SMIM28A0A1B0GU29 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC19■□□□□ 0.63
SMIM28A0A1B0GU29 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC19■□□□□ 0.63
SMIM28A0A1B0GU29 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC19■□□□□ 0.63
SMIM28A0A1B0GU29 RNF151-202ENST00000569210 853 ntTSL 2 BASIC19■□□□□ 0.63
SMIM28A0A1B0GU29 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC19■□□□□ 0.63
SMIM28A0A1B0GU29 LITAF-211ENST00000572255 516 ntTSL 4 BASIC19■□□□□ 0.63
SMIM28A0A1B0GU29 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC19■□□□□ 0.63
SMIM28A0A1B0GU29 NME4-212ENST00000621774 904 ntTSL 3 BASIC19■□□□□ 0.63
SMIM28A0A1B0GU29 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC19■□□□□ 0.63
SMIM28A0A1B0GU29 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC19■□□□□ 0.63
SMIM28A0A1B0GU29 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC19■□□□□ 0.63
SMIM28A0A1B0GU29 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
SMIM28A0A1B0GU29 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SMIM28A0A1B0GU29 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SMIM28A0A1B0GU29 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC19■□□□□ 0.63
SMIM28A0A1B0GU29 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SMIM28A0A1B0GU29 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19■□□□□ 0.63
SMIM28A0A1B0GU29 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
SMIM28A0A1B0GU29 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
SMIM28A0A1B0GU29 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
SMIM28A0A1B0GU29 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC19■□□□□ 0.63
SMIM28A0A1B0GU29 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SMIM28A0A1B0GU29 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC18.99■□□□□ 0.63
SMIM28A0A1B0GU29 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMIM28A0A1B0GU29 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMIM28A0A1B0GU29 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC18.99■□□□□ 0.63
SMIM28A0A1B0GU29 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC18.99■□□□□ 0.63
SMIM28A0A1B0GU29 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
SMIM28A0A1B0GU29 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SMIM28A0A1B0GU29 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMIM28A0A1B0GU29 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SMIM28A0A1B0GU29 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC18.99■□□□□ 0.63
SMIM28A0A1B0GU29 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC18.99■□□□□ 0.63
SMIM28A0A1B0GU29 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC18.99■□□□□ 0.63
SMIM28A0A1B0GU29 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC18.99■□□□□ 0.63
SMIM28A0A1B0GU29 AC012640.2-201ENST00000561606 901 ntBASIC18.99■□□□□ 0.63
SMIM28A0A1B0GU29 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC18.99■□□□□ 0.63
SMIM28A0A1B0GU29 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC18.99■□□□□ 0.63
SMIM28A0A1B0GU29 AC116407.3-201ENST00000623905 1129 ntBASIC18.99■□□□□ 0.63
SMIM28A0A1B0GU29 AC107918.4-202ENST00000641623 219 ntBASIC18.99■□□□□ 0.63
SMIM28A0A1B0GU29 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
SMIM28A0A1B0GU29 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC18.99■□□□□ 0.63
SMIM28A0A1B0GU29 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC18.99■□□□□ 0.63
SMIM28A0A1B0GU29 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC18.99■□□□□ 0.63
SMIM28A0A1B0GU29 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMIM28A0A1B0GU29 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMIM28A0A1B0GU29 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SMIM28A0A1B0GU29 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
SMIM28A0A1B0GU29 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC18.99■□□□□ 0.63
SMIM28A0A1B0GU29 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
SMIM28A0A1B0GU29 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC18.98■□□□□ 0.63
SMIM28A0A1B0GU29 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMIM28A0A1B0GU29 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMIM28A0A1B0GU29 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
SMIM28A0A1B0GU29 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMIM28A0A1B0GU29 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.98■□□□□ 0.63
SMIM28A0A1B0GU29 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.98■□□□□ 0.63
SMIM28A0A1B0GU29 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SMIM28A0A1B0GU29 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SMIM28A0A1B0GU29 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SMIM28A0A1B0GU29 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SMIM28A0A1B0GU29 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMIM28A0A1B0GU29 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.98■□□□□ 0.63
SMIM28A0A1B0GU29 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
SMIM28A0A1B0GU29 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
SMIM28A0A1B0GU29 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC18.98■□□□□ 0.63
SMIM28A0A1B0GU29 AL020989.1-201ENST00000422979 469 ntBASIC18.98■□□□□ 0.63
SMIM28A0A1B0GU29 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMIM28A0A1B0GU29 MSRA-206ENST00000521209 814 ntTSL 3 BASIC18.98■□□□□ 0.63
SMIM28A0A1B0GU29 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC18.98■□□□□ 0.63
SMIM28A0A1B0GU29 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC18.98■□□□□ 0.63
SMIM28A0A1B0GU29 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC18.98■□□□□ 0.63
SMIM28A0A1B0GU29 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC18.98■□□□□ 0.63
SMIM28A0A1B0GU29 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMIM28A0A1B0GU29 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
SMIM28A0A1B0GU29 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
SMIM28A0A1B0GU29 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC18.98■□□□□ 0.63
SMIM28A0A1B0GU29 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMIM28A0A1B0GU29 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
SMIM28A0A1B0GU29 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.98■□□□□ 0.63
SMIM28A0A1B0GU29 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMIM28A0A1B0GU29 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SMIM28A0A1B0GU29 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMIM28A0A1B0GU29 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SMIM28A0A1B0GU29 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SMIM28A0A1B0GU29 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 70.3 ms