Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC17.76■□□□□ 0.43
USH1CQ9Y6N9 DOC2GP-204ENST00000639052 2548 ntBASIC17.76■□□□□ 0.43
USH1CQ9Y6N9 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USH1CQ9Y6N9 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
USH1CQ9Y6N9 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
USH1CQ9Y6N9 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC17.76■□□□□ 0.43
USH1CQ9Y6N9 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
USH1CQ9Y6N9 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USH1CQ9Y6N9 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
USH1CQ9Y6N9 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
USH1CQ9Y6N9 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
USH1CQ9Y6N9 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
USH1CQ9Y6N9 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USH1CQ9Y6N9 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
USH1CQ9Y6N9 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC17.75■□□□□ 0.43
USH1CQ9Y6N9 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC17.75■□□□□ 0.43
USH1CQ9Y6N9 AC104771.1-201ENST00000603335 964 ntBASIC17.75■□□□□ 0.43
USH1CQ9Y6N9 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC17.75■□□□□ 0.43
USH1CQ9Y6N9 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
USH1CQ9Y6N9 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC17.75■□□□□ 0.43
USH1CQ9Y6N9 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USH1CQ9Y6N9 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USH1CQ9Y6N9 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
USH1CQ9Y6N9 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
USH1CQ9Y6N9 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC17.75■□□□□ 0.43
USH1CQ9Y6N9 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC17.75■□□□□ 0.43
USH1CQ9Y6N9 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USH1CQ9Y6N9 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USH1CQ9Y6N9 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
USH1CQ9Y6N9 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
USH1CQ9Y6N9 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
USH1CQ9Y6N9 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USH1CQ9Y6N9 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
USH1CQ9Y6N9 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
USH1CQ9Y6N9 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC17.74■□□□□ 0.43
USH1CQ9Y6N9 OS9-205ENST00000413095 1660 ntTSL 2 BASIC17.74■□□□□ 0.43
USH1CQ9Y6N9 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
USH1CQ9Y6N9 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
USH1CQ9Y6N9 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
USH1CQ9Y6N9 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC17.74■□□□□ 0.43
USH1CQ9Y6N9 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC17.74■□□□□ 0.43
USH1CQ9Y6N9 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.74■□□□□ 0.43
USH1CQ9Y6N9 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
USH1CQ9Y6N9 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
USH1CQ9Y6N9 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC17.74■□□□□ 0.43
USH1CQ9Y6N9 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.74■□□□□ 0.43
USH1CQ9Y6N9 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.43
USH1CQ9Y6N9 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
USH1CQ9Y6N9 FDX2-207ENST00000494368 584 ntTSL 4 BASIC17.74■□□□□ 0.43
USH1CQ9Y6N9 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC17.74■□□□□ 0.43
USH1CQ9Y6N9 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC17.74■□□□□ 0.43
USH1CQ9Y6N9 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC17.74■□□□□ 0.43
USH1CQ9Y6N9 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC17.74■□□□□ 0.43
USH1CQ9Y6N9 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
USH1CQ9Y6N9 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.74■□□□□ 0.43
USH1CQ9Y6N9 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
USH1CQ9Y6N9 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC17.74■□□□□ 0.43
USH1CQ9Y6N9 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
USH1CQ9Y6N9 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.74■□□□□ 0.43
USH1CQ9Y6N9 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
USH1CQ9Y6N9 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC17.74■□□□□ 0.43
USH1CQ9Y6N9 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
USH1CQ9Y6N9 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC17.74■□□□□ 0.43
USH1CQ9Y6N9 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
USH1CQ9Y6N9 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
USH1CQ9Y6N9 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.73■□□□□ 0.43
USH1CQ9Y6N9 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USH1CQ9Y6N9 CYP51A1P1-201ENST00000492267 1507 ntBASIC17.73■□□□□ 0.43
USH1CQ9Y6N9 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
USH1CQ9Y6N9 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
USH1CQ9Y6N9 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
USH1CQ9Y6N9 LINC01126-201ENST00000623515 1646 ntBASIC17.73■□□□□ 0.43
USH1CQ9Y6N9 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
USH1CQ9Y6N9 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
USH1CQ9Y6N9 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USH1CQ9Y6N9 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USH1CQ9Y6N9 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
USH1CQ9Y6N9 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USH1CQ9Y6N9 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
USH1CQ9Y6N9 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC17.73■□□□□ 0.43
USH1CQ9Y6N9 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC17.73■□□□□ 0.43
USH1CQ9Y6N9 CABP2-204ENST00000636477 941 ntTSL 5 BASIC17.73■□□□□ 0.43
USH1CQ9Y6N9 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USH1CQ9Y6N9 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC17.73■□□□□ 0.43
USH1CQ9Y6N9 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC17.73■□□□□ 0.43
USH1CQ9Y6N9 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USH1CQ9Y6N9 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USH1CQ9Y6N9 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
USH1CQ9Y6N9 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USH1CQ9Y6N9 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USH1CQ9Y6N9 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USH1CQ9Y6N9 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
USH1CQ9Y6N9 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
USH1CQ9Y6N9 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.72■□□□□ 0.43
USH1CQ9Y6N9 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.72■□□□□ 0.43
USH1CQ9Y6N9 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.72■□□□□ 0.43
USH1CQ9Y6N9 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
USH1CQ9Y6N9 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC17.72■□□□□ 0.43
USH1CQ9Y6N9 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USH1CQ9Y6N9 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms