Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIMA1Q9UHB6 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIMA1Q9UHB6 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIMA1Q9UHB6 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIMA1Q9UHB6 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC19.43■□□□□ 0.7
LIMA1Q9UHB6 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
LIMA1Q9UHB6 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIMA1Q9UHB6 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIMA1Q9UHB6 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIMA1Q9UHB6 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIMA1Q9UHB6 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
LIMA1Q9UHB6 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMA1Q9UHB6 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMA1Q9UHB6 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMA1Q9UHB6 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
LIMA1Q9UHB6 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMA1Q9UHB6 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LIMA1Q9UHB6 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
LIMA1Q9UHB6 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMA1Q9UHB6 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
LIMA1Q9UHB6 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LIMA1Q9UHB6 DUT-205ENST00000558813 769 ntTSL 2 BASIC19.42■□□□□ 0.7
LIMA1Q9UHB6 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC19.42■□□□□ 0.7
LIMA1Q9UHB6 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMA1Q9UHB6 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMA1Q9UHB6 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LIMA1Q9UHB6 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LIMA1Q9UHB6 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
LIMA1Q9UHB6 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMA1Q9UHB6 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LIMA1Q9UHB6 BCL2-203ENST00000589955 5011 ntBASIC19.42■□□□□ 0.7
LIMA1Q9UHB6 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LIMA1Q9UHB6 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMA1Q9UHB6 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC19.41■□□□□ 0.7
LIMA1Q9UHB6 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
LIMA1Q9UHB6 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC19.41■□□□□ 0.7
LIMA1Q9UHB6 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LIMA1Q9UHB6 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIMA1Q9UHB6 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC19.41■□□□□ 0.7
LIMA1Q9UHB6 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
LIMA1Q9UHB6 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC19.41■□□□□ 0.7
LIMA1Q9UHB6 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC19.41■□□□□ 0.7
LIMA1Q9UHB6 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LIMA1Q9UHB6 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
LIMA1Q9UHB6 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIMA1Q9UHB6 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC19.41■□□□□ 0.7
LIMA1Q9UHB6 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC19.41■□□□□ 0.7
LIMA1Q9UHB6 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LIMA1Q9UHB6 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC19.41■□□□□ 0.7
LIMA1Q9UHB6 TSPY12P-201ENST00000421279 868 ntBASIC19.41■□□□□ 0.7
LIMA1Q9UHB6 KRT18P48-201ENST00000434763 852 ntBASIC19.41■□□□□ 0.7
LIMA1Q9UHB6 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LIMA1Q9UHB6 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC19.41■□□□□ 0.7
LIMA1Q9UHB6 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
LIMA1Q9UHB6 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC19.41■□□□□ 0.7
LIMA1Q9UHB6 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC19.41■□□□□ 0.7
LIMA1Q9UHB6 AC145285.6-201ENST00000604632 637 ntBASIC19.41■□□□□ 0.7
LIMA1Q9UHB6 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIMA1Q9UHB6 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LIMA1Q9UHB6 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIMA1Q9UHB6 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIMA1Q9UHB6 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LIMA1Q9UHB6 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIMA1Q9UHB6 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIMA1Q9UHB6 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIMA1Q9UHB6 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC19.41■□□□□ 0.7
LIMA1Q9UHB6 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LIMA1Q9UHB6 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIMA1Q9UHB6 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC19.4■□□□□ 0.7
LIMA1Q9UHB6 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LIMA1Q9UHB6 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
LIMA1Q9UHB6 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMA1Q9UHB6 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMA1Q9UHB6 HTR7P1-202ENST00000624664 4411 ntBASIC19.4■□□□□ 0.7
LIMA1Q9UHB6 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMA1Q9UHB6 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMA1Q9UHB6 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMA1Q9UHB6 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMA1Q9UHB6 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LIMA1Q9UHB6 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMA1Q9UHB6 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LIMA1Q9UHB6 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LIMA1Q9UHB6 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC19.4■□□□□ 0.7
LIMA1Q9UHB6 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMA1Q9UHB6 AL441883.1-201ENST00000566170 1045 ntBASIC19.4■□□□□ 0.7
LIMA1Q9UHB6 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
LIMA1Q9UHB6 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC19.4■□□□□ 0.7
LIMA1Q9UHB6 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC19.4■□□□□ 0.7
LIMA1Q9UHB6 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMA1Q9UHB6 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LIMA1Q9UHB6 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMA1Q9UHB6 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMA1Q9UHB6 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LIMA1Q9UHB6 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC19.39■□□□□ 0.7
LIMA1Q9UHB6 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
LIMA1Q9UHB6 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
LIMA1Q9UHB6 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.7
LIMA1Q9UHB6 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
LIMA1Q9UHB6 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
LIMA1Q9UHB6 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms