Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
RPAP1Q9BWH6 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
RPAP1Q9BWH6 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
RPAP1Q9BWH6 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC21.57■■□□□ 1.04
RPAP1Q9BWH6 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
RPAP1Q9BWH6 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
RPAP1Q9BWH6 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
RPAP1Q9BWH6 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
RPAP1Q9BWH6 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC21.57■■□□□ 1.04
RPAP1Q9BWH6 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC21.57■■□□□ 1.04
RPAP1Q9BWH6 DANCR-204ENST00000444958 709 ntTSL 3 BASIC21.57■■□□□ 1.04
RPAP1Q9BWH6 MEG3-211ENST00000452514 461 ntTSL 3 BASIC21.57■■□□□ 1.04
RPAP1Q9BWH6 FGFR3P6-201ENST00000457012 610 ntBASIC21.57■■□□□ 1.04
RPAP1Q9BWH6 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC21.57■■□□□ 1.04
RPAP1Q9BWH6 GZMM-202ENST00000592501 941 ntTSL 3 BASIC21.57■■□□□ 1.04
RPAP1Q9BWH6 AL138831.2-201ENST00000606564 490 ntBASIC21.57■■□□□ 1.04
RPAP1Q9BWH6 AC148477.8-201ENST00000624298 468 ntBASIC21.57■■□□□ 1.04
RPAP1Q9BWH6 AC117500.6-201ENST00000624871 588 ntBASIC21.57■■□□□ 1.04
RPAP1Q9BWH6 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC21.57■■□□□ 1.04
RPAP1Q9BWH6 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RPAP1Q9BWH6 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
RPAP1Q9BWH6 LTB4R2-202ENST00000528054 3092 ntBASIC21.57■■□□□ 1.04
RPAP1Q9BWH6 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RPAP1Q9BWH6 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RPAP1Q9BWH6 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC21.56■■□□□ 1.04
RPAP1Q9BWH6 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RPAP1Q9BWH6 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
RPAP1Q9BWH6 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
RPAP1Q9BWH6 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
RPAP1Q9BWH6 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC21.56■■□□□ 1.04
RPAP1Q9BWH6 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
RPAP1Q9BWH6 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RPAP1Q9BWH6 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RPAP1Q9BWH6 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RPAP1Q9BWH6 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RPAP1Q9BWH6 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
RPAP1Q9BWH6 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC21.56■■□□□ 1.04
RPAP1Q9BWH6 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
RPAP1Q9BWH6 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC21.56■■□□□ 1.04
RPAP1Q9BWH6 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC21.56■■□□□ 1.04
RPAP1Q9BWH6 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
RPAP1Q9BWH6 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RPAP1Q9BWH6 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC21.56■■□□□ 1.04
RPAP1Q9BWH6 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC21.56■■□□□ 1.04
RPAP1Q9BWH6 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC21.56■■□□□ 1.04
RPAP1Q9BWH6 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC21.56■■□□□ 1.04
RPAP1Q9BWH6 AC243591.1-201ENST00000452967 1364 ntBASIC21.56■■□□□ 1.04
RPAP1Q9BWH6 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RPAP1Q9BWH6 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
RPAP1Q9BWH6 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RPAP1Q9BWH6 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC21.55■■□□□ 1.04
RPAP1Q9BWH6 TP73-AS1-210ENST00000637775 1455 ntBASIC21.55■■□□□ 1.04
RPAP1Q9BWH6 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RPAP1Q9BWH6 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
RPAP1Q9BWH6 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
RPAP1Q9BWH6 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RPAP1Q9BWH6 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC21.55■■□□□ 1.04
RPAP1Q9BWH6 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
RPAP1Q9BWH6 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC21.55■■□□□ 1.04
RPAP1Q9BWH6 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RPAP1Q9BWH6 MIR574-201ENST00000385209 96 ntBASIC21.55■■□□□ 1.04
RPAP1Q9BWH6 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
RPAP1Q9BWH6 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC21.55■■□□□ 1.04
RPAP1Q9BWH6 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
RPAP1Q9BWH6 AC068472.1-201ENST00000474589 881 ntBASIC21.55■■□□□ 1.04
RPAP1Q9BWH6 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC21.55■■□□□ 1.04
RPAP1Q9BWH6 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
RPAP1Q9BWH6 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC21.55■■□□□ 1.04
RPAP1Q9BWH6 ABBA01031661.1-201ENST00000634362 1253 ntBASIC21.55■■□□□ 1.04
RPAP1Q9BWH6 AF228730.7-201ENST00000641842 219 ntBASIC21.55■■□□□ 1.04
RPAP1Q9BWH6 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RPAP1Q9BWH6 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
RPAP1Q9BWH6 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC21.55■■□□□ 1.04
RPAP1Q9BWH6 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
RPAP1Q9BWH6 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RPAP1Q9BWH6 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RPAP1Q9BWH6 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
RPAP1Q9BWH6 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC21.55■■□□□ 1.04
RPAP1Q9BWH6 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC21.55■■□□□ 1.04
RPAP1Q9BWH6 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RPAP1Q9BWH6 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC21.54■■□□□ 1.04
RPAP1Q9BWH6 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC21.54■■□□□ 1.04
RPAP1Q9BWH6 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RPAP1Q9BWH6 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC21.54■■□□□ 1.04
RPAP1Q9BWH6 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC21.54■■□□□ 1.04
RPAP1Q9BWH6 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
RPAP1Q9BWH6 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RPAP1Q9BWH6 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RPAP1Q9BWH6 RCN1P2-201ENST00000398357 915 ntBASIC21.54■■□□□ 1.04
RPAP1Q9BWH6 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC21.54■■□□□ 1.04
RPAP1Q9BWH6 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC21.54■■□□□ 1.04
RPAP1Q9BWH6 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
RPAP1Q9BWH6 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC21.54■■□□□ 1.04
RPAP1Q9BWH6 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC21.54■■□□□ 1.04
RPAP1Q9BWH6 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
RPAP1Q9BWH6 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC21.54■■□□□ 1.04
RPAP1Q9BWH6 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
RPAP1Q9BWH6 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
RPAP1Q9BWH6 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
RPAP1Q9BWH6 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC21.54■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 10.2 ms