Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 RCN1P1-201ENST00000400413 996 ntBASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 AC145285.6-201ENST00000604632 637 ntBASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 AC079602.3-201ENST00000623931 403 ntBASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 AC092865.7-201ENST00000641832 219 ntBASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
TRIM56Q9BRZ2 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM56Q9BRZ2 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM56Q9BRZ2 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM56Q9BRZ2 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC18.16■□□□□ 0.5
TRIM56Q9BRZ2 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM56Q9BRZ2 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM56Q9BRZ2 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM56Q9BRZ2 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM56Q9BRZ2 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM56Q9BRZ2 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC18.16■□□□□ 0.5
TRIM56Q9BRZ2 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
TRIM56Q9BRZ2 PVRIG2P-201ENST00000435460 978 ntBASIC18.16■□□□□ 0.5
TRIM56Q9BRZ2 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC18.16■□□□□ 0.5
TRIM56Q9BRZ2 CD81-212ENST00000526072 1172 ntTSL 5 BASIC18.16■□□□□ 0.5
TRIM56Q9BRZ2 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC18.16■□□□□ 0.5
TRIM56Q9BRZ2 TK2-213ENST00000563369 882 ntTSL 5 BASIC18.16■□□□□ 0.5
TRIM56Q9BRZ2 TK1-205ENST00000590862 642 ntTSL 3 BASIC18.16■□□□□ 0.5
TRIM56Q9BRZ2 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC18.16■□□□□ 0.5
TRIM56Q9BRZ2 KRT18P22-201ENST00000402024 1347 ntBASIC18.16■□□□□ 0.5
TRIM56Q9BRZ2 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC18.16■□□□□ 0.5
TRIM56Q9BRZ2 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM56Q9BRZ2 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM56Q9BRZ2 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM56Q9BRZ2 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM56Q9BRZ2 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC18.16■□□□□ 0.5
TRIM56Q9BRZ2 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.16■□□□□ 0.5
TRIM56Q9BRZ2 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM56Q9BRZ2 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC18.16■□□□□ 0.5
TRIM56Q9BRZ2 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM56Q9BRZ2 OR6D1P-203ENST00000641209 4860 ntBASIC18.16■□□□□ 0.5
TRIM56Q9BRZ2 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM56Q9BRZ2 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM56Q9BRZ2 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
TRIM56Q9BRZ2 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM56Q9BRZ2 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC18.15■□□□□ 0.5
TRIM56Q9BRZ2 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC18.15■□□□□ 0.5
TRIM56Q9BRZ2 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM56Q9BRZ2 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC18.15■□□□□ 0.5
TRIM56Q9BRZ2 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM56Q9BRZ2 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM56Q9BRZ2 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC18.15■□□□□ 0.5
TRIM56Q9BRZ2 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM56Q9BRZ2 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM56Q9BRZ2 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM56Q9BRZ2 SLC25A3P1-201ENST00000443844 931 ntBASIC18.15■□□□□ 0.5
TRIM56Q9BRZ2 DUTP2-201ENST00000519164 463 ntBASIC18.15■□□□□ 0.5
TRIM56Q9BRZ2 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC18.15■□□□□ 0.5
TRIM56Q9BRZ2 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC18.15■□□□□ 0.5
TRIM56Q9BRZ2 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC18.15■□□□□ 0.5
TRIM56Q9BRZ2 GPX4-207ENST00000589115 812 ntTSL 2 BASIC18.15■□□□□ 0.5
TRIM56Q9BRZ2 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC18.15■□□□□ 0.5
TRIM56Q9BRZ2 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
TRIM56Q9BRZ2 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM56Q9BRZ2 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM56Q9BRZ2 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM56Q9BRZ2 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM56Q9BRZ2 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM56Q9BRZ2 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM56Q9BRZ2 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
TRIM56Q9BRZ2 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM56Q9BRZ2 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM56Q9BRZ2 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM56Q9BRZ2 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC18.15■□□□□ 0.5
TRIM56Q9BRZ2 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC18.15■□□□□ 0.5
TRIM56Q9BRZ2 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.15■□□□□ 0.5
TRIM56Q9BRZ2 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC18.15■□□□□ 0.5
TRIM56Q9BRZ2 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM56Q9BRZ2 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM56Q9BRZ2 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
TRIM56Q9BRZ2 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
TRIM56Q9BRZ2 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TRIM56Q9BRZ2 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms