Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HDDC3Q8N4P3 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
HDDC3Q8N4P3 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC17.81■□□□□ 0.44
HDDC3Q8N4P3 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
HDDC3Q8N4P3 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HDDC3Q8N4P3 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC17.81■□□□□ 0.44
HDDC3Q8N4P3 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HDDC3Q8N4P3 RAB17-203ENST00000409576 466 ntTSL 3 BASIC17.81■□□□□ 0.44
HDDC3Q8N4P3 PMS2P2-201ENST00000425039 1128 ntBASIC17.81■□□□□ 0.44
HDDC3Q8N4P3 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC17.81■□□□□ 0.44
HDDC3Q8N4P3 HMGN1P19-201ENST00000436976 333 ntBASIC17.81■□□□□ 0.44
HDDC3Q8N4P3 DNAJB3-201ENST00000446806 729 ntBASIC17.81■□□□□ 0.44
HDDC3Q8N4P3 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
HDDC3Q8N4P3 AC122714.2-201ENST00000502787 707 ntBASIC17.81■□□□□ 0.44
HDDC3Q8N4P3 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
HDDC3Q8N4P3 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC17.81■□□□□ 0.44
HDDC3Q8N4P3 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC17.81■□□□□ 0.44
HDDC3Q8N4P3 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC17.81■□□□□ 0.44
HDDC3Q8N4P3 PNMT-203ENST00000581428 677 ntTSL 2 BASIC17.81■□□□□ 0.44
HDDC3Q8N4P3 AC010327.4-202ENST00000591484 748 ntBASIC17.81■□□□□ 0.44
HDDC3Q8N4P3 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
HDDC3Q8N4P3 AL355385.1-201ENST00000606123 409 ntBASIC17.81■□□□□ 0.44
HDDC3Q8N4P3 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.81■□□□□ 0.44
HDDC3Q8N4P3 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
HDDC3Q8N4P3 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HDDC3Q8N4P3 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HDDC3Q8N4P3 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
HDDC3Q8N4P3 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
HDDC3Q8N4P3 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.81■□□□□ 0.44
HDDC3Q8N4P3 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HDDC3Q8N4P3 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HDDC3Q8N4P3 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HDDC3Q8N4P3 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC17.8■□□□□ 0.44
HDDC3Q8N4P3 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
HDDC3Q8N4P3 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HDDC3Q8N4P3 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC17.8■□□□□ 0.44
HDDC3Q8N4P3 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HDDC3Q8N4P3 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.8■□□□□ 0.44
HDDC3Q8N4P3 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC17.8■□□□□ 0.44
HDDC3Q8N4P3 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC17.8■□□□□ 0.44
HDDC3Q8N4P3 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HDDC3Q8N4P3 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.8■□□□□ 0.44
HDDC3Q8N4P3 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HDDC3Q8N4P3 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
HDDC3Q8N4P3 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
HDDC3Q8N4P3 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HDDC3Q8N4P3 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HDDC3Q8N4P3 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
HDDC3Q8N4P3 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
HDDC3Q8N4P3 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
HDDC3Q8N4P3 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HDDC3Q8N4P3 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HDDC3Q8N4P3 CSF3-203ENST00000394148 622 ntTSL 3 BASIC17.8■□□□□ 0.44
HDDC3Q8N4P3 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HDDC3Q8N4P3 RPS8P6-201ENST00000426177 609 ntBASIC17.8■□□□□ 0.44
HDDC3Q8N4P3 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC17.8■□□□□ 0.44
HDDC3Q8N4P3 PON3-205ENST00000451904 1053 ntTSL 3 BASIC17.8■□□□□ 0.44
HDDC3Q8N4P3 OR7E14P-202ENST00000530490 1290 ntBASIC17.8■□□□□ 0.44
HDDC3Q8N4P3 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HDDC3Q8N4P3 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC17.8■□□□□ 0.44
HDDC3Q8N4P3 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC17.8■□□□□ 0.44
HDDC3Q8N4P3 HOTTIP_1.1-201ENST00000620415 57 ntBASIC17.8■□□□□ 0.44
HDDC3Q8N4P3 AC055717.3-201ENST00000622967 595 ntBASIC17.8■□□□□ 0.44
HDDC3Q8N4P3 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HDDC3Q8N4P3 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HDDC3Q8N4P3 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC17.8■□□□□ 0.44
HDDC3Q8N4P3 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HDDC3Q8N4P3 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.8■□□□□ 0.44
HDDC3Q8N4P3 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HDDC3Q8N4P3 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HDDC3Q8N4P3 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HDDC3Q8N4P3 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HDDC3Q8N4P3 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HDDC3Q8N4P3 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HDDC3Q8N4P3 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.79■□□□□ 0.44
HDDC3Q8N4P3 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HDDC3Q8N4P3 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HDDC3Q8N4P3 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HDDC3Q8N4P3 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HDDC3Q8N4P3 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
HDDC3Q8N4P3 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
HDDC3Q8N4P3 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HDDC3Q8N4P3 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HDDC3Q8N4P3 COX5BP2-201ENST00000392354 334 ntBASIC17.79■□□□□ 0.44
HDDC3Q8N4P3 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
HDDC3Q8N4P3 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC17.79■□□□□ 0.44
HDDC3Q8N4P3 AC092910.1-201ENST00000482027 1129 ntBASIC17.79■□□□□ 0.44
HDDC3Q8N4P3 IGHV3-22-201ENST00000520721 359 ntBASIC17.79■□□□□ 0.44
HDDC3Q8N4P3 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC17.79■□□□□ 0.44
HDDC3Q8N4P3 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
HDDC3Q8N4P3 CD63-204ENST00000546939 779 ntTSL 3 BASIC17.79■□□□□ 0.44
HDDC3Q8N4P3 MTDHP4-201ENST00000600287 670 ntBASIC17.79■□□□□ 0.44
HDDC3Q8N4P3 AC025062.2-201ENST00000605477 670 ntBASIC17.79■□□□□ 0.44
HDDC3Q8N4P3 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
HDDC3Q8N4P3 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
HDDC3Q8N4P3 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
HDDC3Q8N4P3 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HDDC3Q8N4P3 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HDDC3Q8N4P3 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC17.79■□□□□ 0.44
HDDC3Q8N4P3 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms