Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.05
CCDC88AQ3V6T2 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
CCDC88AQ3V6T2 PAWRP1-201ENST00000451083 565 ntBASIC21.58■■□□□ 1.05
CCDC88AQ3V6T2 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC21.58■■□□□ 1.05
CCDC88AQ3V6T2 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC21.58■■□□□ 1.05
CCDC88AQ3V6T2 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC21.58■■□□□ 1.05
CCDC88AQ3V6T2 TK1-204ENST00000590430 683 ntTSL 3 BASIC21.58■■□□□ 1.05
CCDC88AQ3V6T2 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC21.58■■□□□ 1.05
CCDC88AQ3V6T2 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CCDC88AQ3V6T2 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
CCDC88AQ3V6T2 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CCDC88AQ3V6T2 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CCDC88AQ3V6T2 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC21.58■■□□□ 1.05
CCDC88AQ3V6T2 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
CCDC88AQ3V6T2 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CCDC88AQ3V6T2 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
CCDC88AQ3V6T2 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
CCDC88AQ3V6T2 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CCDC88AQ3V6T2 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
CCDC88AQ3V6T2 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
CCDC88AQ3V6T2 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC21.58■■□□□ 1.04
CCDC88AQ3V6T2 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC21.58■■□□□ 1.04
CCDC88AQ3V6T2 AC087641.1-201ENST00000557561 1021 ntBASIC21.58■■□□□ 1.04
CCDC88AQ3V6T2 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC21.58■■□□□ 1.04
CCDC88AQ3V6T2 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.04
CCDC88AQ3V6T2 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CCDC88AQ3V6T2 POR-209ENST00000439269 1858 ntTSL 2 BASIC21.58■■□□□ 1.04
CCDC88AQ3V6T2 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.04
CCDC88AQ3V6T2 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC21.57■■□□□ 1.04
CCDC88AQ3V6T2 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC21.57■■□□□ 1.04
CCDC88AQ3V6T2 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC21.57■■□□□ 1.04
CCDC88AQ3V6T2 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC88AQ3V6T2 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
CCDC88AQ3V6T2 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
CCDC88AQ3V6T2 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC88AQ3V6T2 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
CCDC88AQ3V6T2 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC21.57■■□□□ 1.04
CCDC88AQ3V6T2 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC21.57■■□□□ 1.04
CCDC88AQ3V6T2 AC073592.5-201ENST00000624854 528 ntBASIC21.57■■□□□ 1.04
CCDC88AQ3V6T2 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC88AQ3V6T2 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC88AQ3V6T2 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC88AQ3V6T2 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC88AQ3V6T2 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC21.57■■□□□ 1.04
CCDC88AQ3V6T2 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC88AQ3V6T2 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC21.57■■□□□ 1.04
CCDC88AQ3V6T2 BSG-215ENST00000618006 1329 ntTSL 2 BASIC21.57■■□□□ 1.04
CCDC88AQ3V6T2 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
CCDC88AQ3V6T2 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC88AQ3V6T2 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC88AQ3V6T2 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC21.57■■□□□ 1.04
CCDC88AQ3V6T2 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
CCDC88AQ3V6T2 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC21.56■■□□□ 1.04
CCDC88AQ3V6T2 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC88AQ3V6T2 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC88AQ3V6T2 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC88AQ3V6T2 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC88AQ3V6T2 AC092474.2-201ENST00000424288 719 ntBASIC21.56■■□□□ 1.04
CCDC88AQ3V6T2 SIGLEC30P-201ENST00000455569 941 ntBASIC21.56■■□□□ 1.04
CCDC88AQ3V6T2 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC88AQ3V6T2 SMN2-210ENST00000511812 867 ntTSL 2 BASIC21.56■■□□□ 1.04
CCDC88AQ3V6T2 IGHV3-65-201ENST00000523210 341 ntBASIC21.56■■□□□ 1.04
CCDC88AQ3V6T2 AC190387.1-201ENST00000551683 408 ntBASIC21.56■■□□□ 1.04
CCDC88AQ3V6T2 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC88AQ3V6T2 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC88AQ3V6T2 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC88AQ3V6T2 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC21.56■■□□□ 1.04
CCDC88AQ3V6T2 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC88AQ3V6T2 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC88AQ3V6T2 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC88AQ3V6T2 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC88AQ3V6T2 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC21.56■■□□□ 1.04
CCDC88AQ3V6T2 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC21.56■■□□□ 1.04
CCDC88AQ3V6T2 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC88AQ3V6T2 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC88AQ3V6T2 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
CCDC88AQ3V6T2 MIR661-201ENST00000384842 89 ntBASIC21.56■■□□□ 1.04
CCDC88AQ3V6T2 AC103564.2-201ENST00000432853 1299 ntBASIC21.56■■□□□ 1.04
CCDC88AQ3V6T2 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC21.56■■□□□ 1.04
CCDC88AQ3V6T2 MEIS3P1-201ENST00000495167 958 ntBASIC21.56■■□□□ 1.04
CCDC88AQ3V6T2 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC88AQ3V6T2 AL513210.1-201ENST00000629608 234 ntBASIC21.56■■□□□ 1.04
CCDC88AQ3V6T2 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC21.56■■□□□ 1.04
CCDC88AQ3V6T2 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
CCDC88AQ3V6T2 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC21.56■■□□□ 1.04
CCDC88AQ3V6T2 AL096828.2-201ENST00000567259 1965 ntBASIC21.55■■□□□ 1.04
CCDC88AQ3V6T2 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC88AQ3V6T2 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC88AQ3V6T2 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC88AQ3V6T2 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC21.55■■□□□ 1.04
CCDC88AQ3V6T2 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC88AQ3V6T2 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC88AQ3V6T2 SIRPAP1-201ENST00000448467 1770 ntBASIC21.55■■□□□ 1.04
CCDC88AQ3V6T2 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC88AQ3V6T2 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC88AQ3V6T2 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC88AQ3V6T2 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
CCDC88AQ3V6T2 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CCDC88AQ3V6T2 AL353135.1-201ENST00000606729 504 ntBASIC21.55■■□□□ 1.04
CCDC88AQ3V6T2 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms