Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
CDH11P55287 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CDH11P55287 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC16.33■□□□□ 0.2
CDH11P55287 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CDH11P55287 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
CDH11P55287 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC16.33■□□□□ 0.2
CDH11P55287 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CDH11P55287 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
CDH11P55287 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CDH11P55287 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC16.33■□□□□ 0.2
CDH11P55287 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC16.33■□□□□ 0.2
CDH11P55287 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
CDH11P55287 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CDH11P55287 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CDH11P55287 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CDH11P55287 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CDH11P55287 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CDH11P55287 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDH11P55287 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDH11P55287 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDH11P55287 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDH11P55287 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDH11P55287 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDH11P55287 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDH11P55287 Telomerase-vert.1-201ENST00000363312 438 ntBASIC16.32■□□□□ 0.2
CDH11P55287 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CDH11P55287 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC16.32■□□□□ 0.2
CDH11P55287 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CDH11P55287 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC16.32■□□□□ 0.2
CDH11P55287 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CDH11P55287 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC16.32■□□□□ 0.2
CDH11P55287 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC16.32■□□□□ 0.2
CDH11P55287 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC16.32■□□□□ 0.2
CDH11P55287 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC16.32■□□□□ 0.2
CDH11P55287 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC16.32■□□□□ 0.2
CDH11P55287 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDH11P55287 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC16.32■□□□□ 0.2
CDH11P55287 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC16.32■□□□□ 0.2
CDH11P55287 CBFB-203ENST00000561924 584 ntTSL 5 BASIC16.32■□□□□ 0.2
CDH11P55287 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
CDH11P55287 AD000864.1-201ENST00000624076 2295 ntBASIC16.32■□□□□ 0.2
CDH11P55287 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CDH11P55287 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDH11P55287 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CDH11P55287 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH11P55287 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH11P55287 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH11P55287 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CDH11P55287 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH11P55287 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH11P55287 AC036111.1-201ENST00000533973 1582 ntBASIC16.31■□□□□ 0.2
CDH11P55287 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH11P55287 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH11P55287 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CDH11P55287 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH11P55287 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CDH11P55287 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC16.31■□□□□ 0.2
CDH11P55287 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC16.31■□□□□ 0.2
CDH11P55287 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH11P55287 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH11P55287 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC16.31■□□□□ 0.2
CDH11P55287 AL359075.1-203ENST00000462729 1002 ntBASIC16.31■□□□□ 0.2
CDH11P55287 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC16.31■□□□□ 0.2
CDH11P55287 AL441883.1-201ENST00000566170 1045 ntBASIC16.31■□□□□ 0.2
CDH11P55287 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC16.31■□□□□ 0.2
CDH11P55287 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC16.31■□□□□ 0.2
CDH11P55287 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH11P55287 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.31■□□□□ 0.2
CDH11P55287 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH11P55287 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CDH11P55287 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH11P55287 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
CDH11P55287 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC16.31■□□□□ 0.2
CDH11P55287 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH11P55287 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH11P55287 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
CDH11P55287 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH11P55287 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH11P55287 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC16.31■□□□□ 0.2
CDH11P55287 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH11P55287 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDH11P55287 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH11P55287 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH11P55287 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH11P55287 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH11P55287 CROCCP1-201ENST00000426910 5675 ntBASIC16.3■□□□□ 0.2
CDH11P55287 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH11P55287 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDH11P55287 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDH11P55287 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH11P55287 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH11P55287 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
CDH11P55287 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC16.3■□□□□ 0.2
CDH11P55287 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC16.3■□□□□ 0.2
CDH11P55287 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH11P55287 MIR4674-201ENST00000582457 87 ntBASIC16.3■□□□□ 0.2
CDH11P55287 NAT14-202ENST00000587400 416 ntTSL 5 BASIC16.3■□□□□ 0.2
CDH11P55287 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC16.3■□□□□ 0.2
CDH11P55287 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC16.3■□□□□ 0.2
CDH11P55287 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms