Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC17.01■□□□□ 0.31
MSX2P35548 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSX2P35548 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.01■□□□□ 0.31
MSX2P35548 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17.01■□□□□ 0.31
MSX2P35548 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC17.01■□□□□ 0.31
MSX2P35548 MESTP1-201ENST00000404287 994 ntBASIC17.01■□□□□ 0.31
MSX2P35548 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.01■□□□□ 0.31
MSX2P35548 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSX2P35548 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSX2P35548 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC17.01■□□□□ 0.31
MSX2P35548 TK2-204ENST00000525974 1178 ntTSL 2 BASIC17.01■□□□□ 0.31
MSX2P35548 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC17.01■□□□□ 0.31
MSX2P35548 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC17.01■□□□□ 0.31
MSX2P35548 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
MSX2P35548 AC026271.3-201ENST00000571884 352 ntBASIC17.01■□□□□ 0.31
MSX2P35548 MIR4674-201ENST00000582457 87 ntBASIC17.01■□□□□ 0.31
MSX2P35548 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC17.01■□□□□ 0.31
MSX2P35548 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC17.01■□□□□ 0.31
MSX2P35548 AC104771.1-201ENST00000603335 964 ntBASIC17.01■□□□□ 0.31
MSX2P35548 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSX2P35548 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSX2P35548 AGK-211ENST00000629555 2765 ntTSL 5 BASIC17.01■□□□□ 0.31
MSX2P35548 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSX2P35548 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC17.01■□□□□ 0.31
MSX2P35548 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSX2P35548 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC17.01■□□□□ 0.31
MSX2P35548 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
MSX2P35548 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSX2P35548 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
MSX2P35548 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
MSX2P35548 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSX2P35548 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSX2P35548 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSX2P35548 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC17.01■□□□□ 0.31
MSX2P35548 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSX2P35548 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.01■□□□□ 0.31
MSX2P35548 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSX2P35548 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
MSX2P35548 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
MSX2P35548 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MSX2P35548 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC17■□□□□ 0.31
MSX2P35548 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC17■□□□□ 0.31
MSX2P35548 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MSX2P35548 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC17■□□□□ 0.31
MSX2P35548 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC17■□□□□ 0.31
MSX2P35548 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC17■□□□□ 0.31
MSX2P35548 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC17■□□□□ 0.31
MSX2P35548 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC17■□□□□ 0.31
MSX2P35548 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MSX2P35548 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MSX2P35548 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MSX2P35548 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MSX2P35548 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
MSX2P35548 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17■□□□□ 0.31
MSX2P35548 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MSX2P35548 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
MSX2P35548 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC17■□□□□ 0.31
MSX2P35548 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC17■□□□□ 0.31
MSX2P35548 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC17■□□□□ 0.31
MSX2P35548 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC17■□□□□ 0.31
MSX2P35548 AP000692.2-201ENST00000608391 879 ntBASIC17■□□□□ 0.31
MSX2P35548 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC17■□□□□ 0.31
MSX2P35548 CABP2-204ENST00000636477 941 ntTSL 5 BASIC17■□□□□ 0.31
MSX2P35548 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC17■□□□□ 0.31
MSX2P35548 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC17■□□□□ 0.31
MSX2P35548 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17■□□□□ 0.31
MSX2P35548 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
MSX2P35548 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
MSX2P35548 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17■□□□□ 0.31
MSX2P35548 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MSX2P35548 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC17■□□□□ 0.31
MSX2P35548 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MSX2P35548 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MSX2P35548 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
MSX2P35548 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
MSX2P35548 REXO1L11P-201ENST00000620964 1927 ntBASIC17■□□□□ 0.31
MSX2P35548 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
MSX2P35548 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
MSX2P35548 HYMAI-201ENST00000635591 3347 ntBASIC16.99■□□□□ 0.31
MSX2P35548 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC16.99■□□□□ 0.31
MSX2P35548 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSX2P35548 HLA-J-201ENST00000462773 1622 ntBASIC16.99■□□□□ 0.31
MSX2P35548 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSX2P35548 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
MSX2P35548 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC16.99■□□□□ 0.31
MSX2P35548 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSX2P35548 WT1-209ENST00000530998 2421 ntTSL 2 BASIC16.99■□□□□ 0.31
MSX2P35548 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.99■□□□□ 0.31
MSX2P35548 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSX2P35548 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
MSX2P35548 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
MSX2P35548 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSX2P35548 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSX2P35548 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.99■□□□□ 0.31
MSX2P35548 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSX2P35548 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
MSX2P35548 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSX2P35548 KRT18P23-201ENST00000435622 1283 ntBASIC16.99■□□□□ 0.31
MSX2P35548 DUTP2-201ENST00000519164 463 ntBASIC16.99■□□□□ 0.31
MSX2P35548 MMAB-206ENST00000540016 945 ntTSL 3 BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 64.7 ms